Lleu010297.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lasioglossum leucozonium
Gene Symbol
-
Assembly
GCA_028454225.1
Location
CM052212.1:3821670-3825152[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.12 8.5 7.1 0.5 6 23 259 276 256 276 0.92
2 13 0.16 11 6.7 0.5 1 23 281 304 281 304 0.96
3 13 0.00016 0.011 16.1 0.4 3 23 318 339 317 339 0.96
4 13 0.015 1.1 9.9 0.8 3 23 352 372 352 372 0.98
5 13 1.5e-07 1e-05 25.7 1.0 3 23 417 437 415 437 0.97
6 13 0.0049 0.35 11.4 0.5 1 23 442 465 442 465 0.93
7 13 1 74 4.1 1.6 2 23 532 553 532 553 0.96
8 13 1.4e-05 0.001 19.4 4.4 1 23 562 584 562 584 0.98
9 13 7.5e-07 5.3e-05 23.5 1.4 1 23 593 615 593 615 0.99
10 13 0.043 3 8.5 4.4 1 22 621 642 621 642 0.95
11 13 0.00079 0.056 13.9 2.9 1 23 670 692 670 692 0.99
12 13 0.18 13 6.5 0.0 1 23 756 779 756 779 0.97
13 13 1.9e-06 0.00013 22.2 4.7 1 23 784 807 784 807 0.96

Sequence Information

Coding Sequence
ATGGCTGTGCCCAACAAGTGGGAGAATGTTTGCAGATTGTGCTCGGAGGAGAGGAACGAAATGTTGCCGATTTTCGGCAACGAAGGCGTGCAGCGGAAAGTCGCGCAAAAGTTGCGGGCTTGCCTGCCGGTTCTAGTGTACAAAACTGATCCACTGCCAAAGCAAATATGTCAGTTCTGCGCCGCGAGGCTCGACGACGTTTACGAGTTTAGGGAATACTGCCTGAGCGTTTACAAAAGCATGCACGCGAAGCTCTTGTCGTTCAAGGACCTGGAGTCGGTTCAAATTTATCTGGACGCAATGAAGAACTCTCCGGACCCTTGTCAGGCACAATTATGGAGAGAAAAAGCGAGAGCACCACCGCCGCTAGTACCTTTGCCAGCCTCACTGCCAGTCGAGAACCCATCGACGCCGATAGATATTAGTCAGGATCATTCGAATACTTGTATAGAATCGTTGCCCGAATTACCTTGTGAAGTGGAGATCAAGGAAATGAACGCAGACCCGATTTTAGGAACTGATATTAGTATTTATGAATCGTCGGATATAAACAATGTAGAAAGTGACCTATATAAGCCAGATGCGATAGCGGAGGATAATAGAAGTTTGTTGAAGGAAGAGGATAATGATAGTTTGCGAGAAGAGATACAGTTGAAGAAGGAAGAGAAAAGAACAAGTATTTTAGAGCAAGTACTAACAGGTAGTTTAACCATCAATGACAGGAAGGAATTAAACTCGAAGGCAAAGTTGTCTTCTAAGTGGTGGTGTGCCCCTTGCAATAGTTACTACAAAACAAAGGAGAGCTTAATGACGCACATGCAGTTGCACTGTCCAAGGAAGTACACTTGCAGAAAATGTGCCGCATGTTTTGAATTAGTTGAAGATTTAGCTAAACACGAAGCAACTAACCATCTAAAGGTGACATTAGATTTTGACAGAAGTCTGAAAGACTGTGATCAATGCGATAGACAGTTCGTAAGCTGGGAAATGTTGAAACAGCACAGGTTACGCGATCATTTGGGCGAATCGATTGATATTGGGACCAATACATGGTGCTCATTATGCAATAGATTCTTCCCTAGCATAGACGACTATAAAAGTCATACTCAGTTGCACGAAACCAATAATTATACGCCGGTGAGAGCATCGCAATTAGTAGATCAGCAAATAGCTCCAGTTATCAAAGTTGAGGAACCTCCAAAAGAAACGAAAAGAGAGCATCTTGTCGAACCTACTAAATCGCTCGCGTGTCCTACATGTGGAAAGGTTTGCACCCAACAAAGCGCGTTGTCGAATCATATGCGTACCCACGAACCGAAAAGACACAAATGTGATATATGCGGACGATCCTTTGGATTGTTCATACGTTTAGCAGCGCATAGAATGAGCGAGCATAGTCAGCATCCTTCGATGTCGCCAGTCATGGCTAGTGTTGAGCAAGAAGAAGCGTTGAACGCTGAAAGAGAAGCACGGGAAGCAAGAACTCGCGCCAGAAGCAGAACGTACACAGAAATGATGGAAAGGAGAAACTCTGCGAACCACGAAGAACCACCTTTGAAAAAGAACGCCCCAAACGCATTTAAAAACGTGGCAAGATGCGGTATCTGTTTGCAATGGTTCAGCGATCATACTACAATGTTAACGCATTTACAAACGCACTCGGATAATTATACATGCAAAAACTTCACTTGTCACATATGTAAAAAGTCTTTCAAGGAAAAGTGGCAGCTATTCCGACACGAGATGTCTCACAAACGCAACGAGTCGGTAGCGATGTACGTGTGCTCGGTATGCAACAAATCATTCGGGGACAAGAGTGCATACAAAACTCATCAGAAAACGCACATCGTCGATAAAACATATCACTGCTCGAAGTGTAATAAAATATTTTTCAAAGAAGTGACACTGTTGACGCATCAATGCACATCGGACATCTTCTACAGTAAGAAAGGAGTCTCCTCGAAGCCCTCGCAAAAAACGACAGCGTCTTTAGGTACTGGTAAAAAATACAAGTGCTCCAAATGCAATGCAACCTTTAACAGTTACCAATCGAAGAATTCTCATATGAAGGTGCACATCGAAGGGTCGCATTCGGCGGTTCAAAACGATGAAGTGCAGCAGCTCGAGTCAGAAGATGAACCTATGCCAAAACTAAGTCCTGAAACGTCAGTGGAATACTCAGTGCCTATTGAACCGAAGGTGGAAATTAACGAAGAAAGTACGCCGCCTCCTATTAAGCGGACTCTTATTAGGACAACTGGCGGATATCGGTGCGGAGTATGTCAATCTCCATTCGTCTTAAGGGAATTAGCAGTTGCACATTTGAGATCTGCACACCCGCTAATGCCATACCAGTGTCCTTATTGTAAAAAGCGATTCACGACTCAGTATACGTTCACGCATCATATAAAAGCTGATCATCCCGACGAGCATGAGAATTGA
Protein Sequence
MAVPNKWENVCRLCSEERNEMLPIFGNEGVQRKVAQKLRACLPVLVYKTDPLPKQICQFCAARLDDVYEFREYCLSVYKSMHAKLLSFKDLESVQIYLDAMKNSPDPCQAQLWREKARAPPPLVPLPASLPVENPSTPIDISQDHSNTCIESLPELPCEVEIKEMNADPILGTDISIYESSDINNVESDLYKPDAIAEDNRSLLKEEDNDSLREEIQLKKEEKRTSILEQVLTGSLTINDRKELNSKAKLSSKWWCAPCNSYYKTKESLMTHMQLHCPRKYTCRKCAACFELVEDLAKHEATNHLKVTLDFDRSLKDCDQCDRQFVSWEMLKQHRLRDHLGESIDIGTNTWCSLCNRFFPSIDDYKSHTQLHETNNYTPVRASQLVDQQIAPVIKVEEPPKETKREHLVEPTKSLACPTCGKVCTQQSALSNHMRTHEPKRHKCDICGRSFGLFIRLAAHRMSEHSQHPSMSPVMASVEQEEALNAEREAREARTRARSRTYTEMMERRNSANHEEPPLKKNAPNAFKNVARCGICLQWFSDHTTMLTHLQTHSDNYTCKNFTCHICKKSFKEKWQLFRHEMSHKRNESVAMYVCSVCNKSFGDKSAYKTHQKTHIVDKTYHCSKCNKIFFKEVTLLTHQCTSDIFYSKKGVSSKPSQKTTASLGTGKKYKCSKCNATFNSYQSKNSHMKVHIEGSHSAVQNDEVQQLESEDEPMPKLSPETSVEYSVPIEPKVEINEESTPPPIKRTLIRTTGGYRCGVCQSPFVLRELAVAHLRSAHPLMPYQCPYCKKRFTTQYTFTHHIKADHPDEHEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00762732;
90% Identity
iTF_00866870;
80% Identity
-