Basic Information

Insect: Lasioglossum leucozonium
Gene Symbol: -
Assembly: GCA_028454225.1
Location: CM052221.1:3068500-3070827[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00028 0.02 15.4 3.9 1 23 230 252 230 252 0.98

2 11 0.014 1 10.0 11.8 1 23 258 280 258 280 0.96

3 11 6.5e-05 0.0046 17.3 6.6 1 23 286 308 286 308 0.99

4 11 0.00053 0.037 14.5 2.3 1 23 314 336 314 336 0.95

5 11 1.4e-06 9.9e-05 22.6 1.9 1 23 342 364 342 364 0.97

6 11 1.6e-05 0.0011 19.3 0.1 1 23 370 392 370 392 0.97

7 11 8.6e-05 0.0061 17.0 1.6 1 23 397 419 397 419 0.97

8 11 6.7e-06 0.00047 20.5 0.0 1 23 425 447 425 447 0.96

9 11 7.2e-05 0.0051 17.2 0.2 2 23 459 480 458 480 0.96

10 11 1.7e-06 0.00012 22.3 2.0 1 23 544 566 544 566 0.97

11 11 1.2e-05 0.00083 19.7 4.4 1 23 576 598 576 598 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00028	0.02	15.4	3.9	1	23	230	252	230	252	0.98
2	11	0.014	1	10.0	11.8	1	23	258	280	258	280	0.96
3	11	6.5e-05	0.0046	17.3	6.6	1	23	286	308	286	308	0.99
4	11	0.00053	0.037	14.5	2.3	1	23	314	336	314	336	0.95
5	11	1.4e-06	9.9e-05	22.6	1.9	1	23	342	364	342	364	0.97
6	11	1.6e-05	0.0011	19.3	0.1	1	23	370	392	370	392	0.97
7	11	8.6e-05	0.0061	17.0	1.6	1	23	397	419	397	419	0.97
8	11	6.7e-06	0.00047	20.5	0.0	1	23	425	447	425	447	0.96
9	11	7.2e-05	0.0051	17.2	0.2	2	23	459	480	458	480	0.96
10	11	1.7e-06	0.00012	22.3	2.0	1	23	544	566	544	566	0.97
11	11	1.2e-05	0.00083	19.7	4.4	1	23	576	598	576	598	0.97

Sequence Information

Coding Sequence: ATGTGCACCACTCCTAGTAACGTAGCCACAGGATTCGGGTATACCTGGTCCTTTGGTGGGCCAGGTGGGGAAGCCCGAGAAAATGCACAGGGTGAACTCACGCCGAATATCAATTACGCCGTGAATAATAATCAAGACCAAGGTTCCAGTCAGAAAATACAGGTTGACATTAAGCCTCCTAAAATTACCAATAGTACGCATCGTAGACCAATGTTCACAATGAATGAAACCTGTCAGCAGACCCCAACGACGCACCACGGCCATACAGCTGGAGCTCATAATCAAACGCACGGCACCCTTGTCCGTGTTAAAAAGCACCACGACGTGTTTTCGTTAACGTGCGACAAAGGAGGTTGCAATTGCGACGCGGCTCATCCGACGCCTGCGCCGTCACTTTTTTCGAATACGCTAGTTTTTACCACCGCCGACAAGCATGCCATGAGTAAGCATTTCATGACACCCCTTGGACCGCTACAACTTACCGCGGAAGAGTGCAATGAAATTTTAATGAAGAGAGCGGCGGCTGCCTCGAATCAAGCCAACGCGAACAACGTGGTAACAAGTCAAACGGACAGCACGGCTCATTTTGGACATGTGTTGACGCATGTTAATACCACGCAAATAGAAACAAAGGTGAAACAGCAGCAAGATATGGGAAGTCAGGTACGAGTCCCGAAAGAAAGGCCGTATTCCTGTTCGGAATGCGGGAAGTCCTTCCTCCTCAAGCATCACCTTACGACGCACGCGAGGGTGCACACGGGGGAGCGACCTCACGTTTGCGTTCATTGTGGCAAAAGTTTTGCGCACAAACACTGTCTTCATACTCACCTACTCCTTCATAGCGCAGATCGACCTTACCAATGTCGCGAATGTAAAAAGTCTTTTACATTAAAGCATCACCTTGTAACGCACACGAGAGTACATACGAGAGATCGGCCATTCATTTGTCAAGAGTGCGGGAGATCGTTTCCCTTAAAACGTCATCTGGTGACTCATAGTAAATTTCATTCAGGAGAGAGACCGTTTGTTTGCGAAGAGTGCGGAGAATCGTTTTCGCAAAAGGATCACCTGACGATGCACTCGCGCTTCCATGGCAGTTTACATCCCTTCGTTTGTCCTGATTGTGGTGCGACCTTCCAGAGAAAGTTTGAATTAGTGAATCATGGCCGTTTGCATGGCAGAGTTCCACACTCGTGTACTGTTTGCGGAAAGGAATTTCTCCAGAAAAGAACATTGTTGGCGCATATGCGTTTGCACACAGGAGAAACTCCGTTCGCGTGCACCGTCTGCGGGGAAGCTTTTCCTAGGAAATCCGACCTTGTTGCCCATTCTAAGATTCATAACAACAACACCAACACGGACGAGAAATCGCTAATGTGCAGGGAATGTGGATTGGACTTCTCGAATCGAGAAGCCCTTACTCTACACTTAAGGTTACATTCTGGCGATCGAACACTTGTTACCGACCTTTGTGGATTAGCGGCCGCCTTCCAGCAAACTCCTGGGCACTTTCTTACTCCTAACACGTCGACGACTCATCAGATGAACGGACCCATTGGAACACCCGGTGTCAGCCATATGCACGGTGCAACGCAAACATCACCGCCAGTGGGTCCGAAGCCAAAACCACACATTTGTCCTGATTGCGGTCGTGGGTTCGCGCAGAAACATGGTTTGTCCCAGCACCAACGGCGTCACACGGACGGCAGTTGCCACATAAGATCGCACGTGTGCGATAAGTGTGGCAAAGCCTTCTACCAGAAAAATCATTTGTTgttgcatcaacgccagcacatggacccgccgccgagcatacttcggcaacaacagagacaagctgcccaggctgctgcccaacaggcacagcagcagcaacaagcgcaacaacagcaacaggtgcaacagcaacaagtgcaacaacaggttcaacaacaacaagtacaacagcagcaggtgcagcaacaacaacagcaacagccccagcaaccgcaacaacaaacgtgtacggttgacacaaaaacaatacagctgcagatacagcaacaagtgcaacaagttcaacaacaagttcagcagcaggtacaacagcaggtacaacaacagcagcaacaacaacagcagcaacaagcgtgctctgtggacactaaagcaatacagtTAAATGTCACTATGTGA
Protein Sequence: MCTTPSNVATGFGYTWSFGGPGGEARENAQGELTPNINYAVNNNQDQGSSQKIQVDIKPPKITNSTHRRPMFTMNETCQQTPTTHHGHTAGAHNQTHGTLVRVKKHHDVFSLTCDKGGCNCDAAHPTPAPSLFSNTLVFTTADKHAMSKHFMTPLGPLQLTAEECNEILMKRAAAASNQANANNVVTSQTDSTAHFGHVLTHVNTTQIETKVKQQQDMGSQVRVPKERPYSCSECGKSFLLKHHLTTHARVHTGERPHVCVHCGKSFAHKHCLHTHLLLHSADRPYQCRECKKSFTLKHHLVTHTRVHTRDRPFICQECGRSFPLKRHLVTHSKFHSGERPFVCEECGESFSQKDHLTMHSRFHGSLHPFVCPDCGATFQRKFELVNHGRLHGRVPHSCTVCGKEFLQKRTLLAHMRLHTGETPFACTVCGEAFPRKSDLVAHSKIHNNNTNTDEKSLMCRECGLDFSNREALTLHLRLHSGDRTLVTDLCGLAAAFQQTPGHFLTPNTSTTHQMNGPIGTPGVSHMHGATQTSPPVGPKPKPHICPDCGRGFAQKHGLSQHQRRHTDGSCHIRSHVCDKCGKAFYQKNHLLLHQRQHMDPPPSILRQQQRQAAQAAAQQAQQQQQAQQQQQVQQQQVQQQVQQQQVQQQQVQQQQQQQPQQPQQQTCTVDTKTIQLQIQQQVQQVQQQVQQQVQQQVQQQQQQQQQQQACSVDTKAIQLNVTM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01509061;
90% Identity: iTF_00684308;
80% Identity: -