Basic Information

Insect: Lasioglossum leucozonium
Gene Symbol: -
Assembly: GCA_028454225.1
Location: CM052217.1:7926728-7930526[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 0.00014 0.01 16.3 0.9 1 23 112 135 112 135 0.96

2 21 2.7e-05 0.0019 18.6 4.0 1 23 141 163 141 163 0.98

3 21 0.017 1.2 9.8 7.6 1 23 172 195 172 195 0.94

4 21 0.0037 0.27 11.8 1.2 1 23 201 223 201 223 0.91

5 21 3.1e-05 0.0022 18.4 2.4 1 23 228 251 228 251 0.96

6 21 0.014 0.96 10.1 2.8 1 23 257 279 257 279 0.97

7 21 8.9e-07 6.3e-05 23.2 0.5 1 23 283 305 283 305 0.98

8 21 0.0018 0.13 12.8 7.4 1 23 311 333 311 333 0.99

9 21 7.3e-05 0.0051 17.2 3.2 1 23 339 361 339 361 0.97

10 21 0.00062 0.044 14.3 0.5 1 23 478 500 478 500 0.98

11 21 0.00052 0.036 14.5 2.3 1 23 541 564 541 564 0.97

12 21 0.0097 0.68 10.5 1.7 1 23 602 625 602 625 0.95

13 21 0.23 16 6.2 7.8 1 23 695 717 695 717 0.98

14 21 0.00063 0.044 14.3 3.4 1 23 726 749 726 749 0.97

15 21 0.17 12 6.6 4.0 1 23 764 787 764 787 0.95

16 21 3.6e-06 0.00025 21.3 0.8 1 23 793 816 793 816 0.95

17 21 0.025 1.8 9.2 0.8 3 23 823 844 821 844 0.94

18 21 0.00096 0.068 13.7 0.4 1 23 849 872 849 872 0.96

19 21 3.6e-08 2.5e-06 27.6 0.4 2 23 879 900 878 900 0.97

20 21 1.1e-06 8e-05 22.9 0.8 1 23 906 928 906 928 0.98

21 21 7.5e-07 5.3e-05 23.4 0.1 1 23 934 956 934 956 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	0.00014	0.01	16.3	0.9	1	23	112	135	112	135	0.96
2	21	2.7e-05	0.0019	18.6	4.0	1	23	141	163	141	163	0.98
3	21	0.017	1.2	9.8	7.6	1	23	172	195	172	195	0.94
4	21	0.0037	0.27	11.8	1.2	1	23	201	223	201	223	0.91
5	21	3.1e-05	0.0022	18.4	2.4	1	23	228	251	228	251	0.96
6	21	0.014	0.96	10.1	2.8	1	23	257	279	257	279	0.97
7	21	8.9e-07	6.3e-05	23.2	0.5	1	23	283	305	283	305	0.98
8	21	0.0018	0.13	12.8	7.4	1	23	311	333	311	333	0.99
9	21	7.3e-05	0.0051	17.2	3.2	1	23	339	361	339	361	0.97
10	21	0.00062	0.044	14.3	0.5	1	23	478	500	478	500	0.98
11	21	0.00052	0.036	14.5	2.3	1	23	541	564	541	564	0.97
12	21	0.0097	0.68	10.5	1.7	1	23	602	625	602	625	0.95
13	21	0.23	16	6.2	7.8	1	23	695	717	695	717	0.98
14	21	0.00063	0.044	14.3	3.4	1	23	726	749	726	749	0.97
15	21	0.17	12	6.6	4.0	1	23	764	787	764	787	0.95
16	21	3.6e-06	0.00025	21.3	0.8	1	23	793	816	793	816	0.95
17	21	0.025	1.8	9.2	0.8	3	23	823	844	821	844	0.94
18	21	0.00096	0.068	13.7	0.4	1	23	849	872	849	872	0.96
19	21	3.6e-08	2.5e-06	27.6	0.4	2	23	879	900	878	900	0.97
20	21	1.1e-06	8e-05	22.9	0.8	1	23	906	928	906	928	0.98
21	21	7.5e-07	5.3e-05	23.4	0.1	1	23	934	956	934	956	0.98

Sequence Information

Coding Sequence: ATGAAGAAATCAGCGAAACATAAAACACGGAGGAATAAGCACAGCCCCGACGAGCGAGCTAACGAACTGAAAGCTCTACGTAAAATCCCGACTGTTTATCAGAGGAGAATAGCATTTCGAGTCTCGAAGAGCCGTAAGCGTAGCAAGTGTCCCAACAAGAAAGAACCAGAAGAGAACCCGGTTCTCCAAAAGAGGGTACTAAGAGTCTCCGCGAGCCGGAAGCAGCCAGTGTTGAACATGAGGAAGAACAACGGGTCGACGAAGAACAATAGCTTGGACAGCGAATACTCCGGCCAGCAAGAAGACCTGTACAAGAAGCTCCACGACGGCTCGTacacctgcgacatttgccagacggtgttcgagcagaagagcaagatcctccggcacatcaccagcaagcacagcttccatcggccgttcaagtgcgcgacctgcgacaagacgttcaagtacaaatgcgacttgaaggcgcacaggctcgtgcaccaggacgtggactcgagcctgcttcactgttgcgacaagtgcgactatcgtacgaagacgaagaacaacctgaagtcccactacatcagacggcacaccgacgactacaagttcgcctgcgagcactgcggcaagcgtttcaagatggaatgggacctgaaattccacgtcggcacgcacggcacgtcccagcacatgtgcgacgtttgcgggaagttctacacgagcaattactcgctgtacaagcaccggaaggtggctcacttgaacgagtacaagttccactgcaccgtttgcaacaaacgactccttacgcaggagaacctggacaatcacatgaagcagcacaacagaacgtacgagtgcaaggagtgcggcaaggtgttcgcctcgaaaaggtacctggccactcacgtgaccactcacaccggcgttaagccgtacacctgtcacgtttgcaagaagaacttccgcacgtcgcacatgaggaacacgcatctgctgacccactcggccgagaggccgcacatttgcgatctctgcgggcagtctttcaaaagacgatactacatgatcgagcaccgaaggaagcatcccgacgcgcatttgtcCTCGCCTCCCATACCTCTTGGGAAGAACAAAGGCGTCGTTGACACGGGCGTAGACTGCGCGACCGAATCTCGCACAGATATTTTACAAGAATGGGTCTACGCGAAGGACGCCTCATCCGTGGACACTTCCGGCCGATCGATCGTTGGGAGGGGCTCGGCATCGTCGCAGTTTCGTCGAACGAACGAATCCGCCGATGGAGCGCCCTCCGCGTCGTCCACGTCCGTTCCCGCGTCAAGAGGCGCAGTGAAATTCGAAGAGGATCAGAAAATATTTCTGTCGTCCGTGAAGCTCGAGCCGAACGATGGCCAGCACGGCGGCGAGTGGAGCTTTTACAGCTGCGCCAAATGCCAGATGGAGTTCCCGATGGAGAGCATGCTGAATCGTCACAGGATGTCGCACAATCTGAACTCGTGGCTGCGTAAGAAGGGCCTGAGCAACGGACCAGCTGCACGATCGAGGTCGAAGAGACGGGAGAAACGAGCGGTGGAGACACCGGCGACACCGCCGGAGAAGCACAAGTACGCGTGCAGCTTCTGCGATTTCGGGTGCAGCAGACGATCCGCGTTGACGGTTCACGTCCGAAAGAAGCACAATTTGCAGGCGTCGAAGGAGGACACGCGTACGGCCAGCGATTTCTGCGAGAGTCAAGCGAACTCGGGGGAACGCGCGCAGACGCGCAGGAACGCTAAAGCCGCCAGAAGCTTCGAGTGCGACGCGTGCGACTTCGTGTGCAAAACGAACAGGACGTTACGTTCCCACGTGGCTCGGAATCATCGGGTGTCTGAGCCGAAAGAGGCCGATGCGAAGCGAAGCGGAAAAGCGAGATGCGACGAGGACGTGGCAGAAGTGCGTTTAGAAGAGTATAAAGAGGAGGACGAGGAGTCCGTCGTTCCTTACGCGCCGGTGGAAGTGATATGCGAGGAGGAGCCTGCCGTGGCAACGATTCGCGCGGGGAAGAAGCAATGCAAGAAACCCGTCGAGCACCAGTGCAATCTCTGCGACTTCAAGTGCGCGAAGAAGAGCACGTTGTACTACCACAAACGCCAGCACAAGGCCGACGACCTGAACGAGATATTCTCGTGCAACGAGTGCGACTTCAAGACCACGAAGAAATCCTCGTTGTACTCGCACATCAAACGGAAACACAGAGCAGCGAGACGCTGCACCGCGGACGGCCTGCCGGAGCTGTTCTGCTgcaaccagtgcgactacaagaacaagaacaagtacgagctgaagatacacgtcgccaggaagcacaccgacgacttcaagttcgcctgcgagacctgcggcaagaaattcaaggtgaaaggcgacctgaccaatcacatccggttcagccacagggaacaaccggtgatctgcgacgtgtgcgggaaaacctgcctgaacagcaactcgctgtacgtccaccagaagttcgcccattacaaggccaagtacgagtgccaggtgtgcaagaggcggatggtcacgcaggagaatctgaacgagcacatggtcaggcagcacgagaaaagggagaacgtggtctgcgaggagtgcgggaaaaccttctcgaggaacagccggctgaaggtgcacatgcggatccacaccggcgacagaccgtatacctgcaccatctgcagcaaatcgttcgcgcgacggacagccttgaaacaacatttgctcattcacaccggaatcagaccgtacgtctgcgacatctgcggcaaggcgttcacgcagaagcccgggcttatcagccacagaaagtctcatcccggatcgcatccgccactGCCGAGAGTGCTGATCGACCACATACTCAACGACGTGATGAAGGAGAATTGA
Protein Sequence: MKKSAKHKTRRNKHSPDERANELKALRKIPTVYQRRIAFRVSKSRKRSKCPNKKEPEENPVLQKRVLRVSASRKQPVLNMRKNNGSTKNNSLDSEYSGQQEDLYKKLHDGSYTCDICQTVFEQKSKILRHITSKHSFHRPFKCATCDKTFKYKCDLKAHRLVHQDVDSSLLHCCDKCDYRTKTKNNLKSHYIRRHTDDYKFACEHCGKRFKMEWDLKFHVGTHGTSQHMCDVCGKFYTSNYSLYKHRKVAHLNEYKFHCTVCNKRLLTQENLDNHMKQHNRTYECKECGKVFASKRYLATHVTTHTGVKPYTCHVCKKNFRTSHMRNTHLLTHSAERPHICDLCGQSFKRRYYMIEHRRKHPDAHLSSPPIPLGKNKGVVDTGVDCATESRTDILQEWVYAKDASSVDTSGRSIVGRGSASSQFRRTNESADGAPSASSTSVPASRGAVKFEEDQKIFLSSVKLEPNDGQHGGEWSFYSCAKCQMEFPMESMLNRHRMSHNLNSWLRKKGLSNGPAARSRSKRREKRAVETPATPPEKHKYACSFCDFGCSRRSALTVHVRKKHNLQASKEDTRTASDFCESQANSGERAQTRRNAKAARSFECDACDFVCKTNRTLRSHVARNHRVSEPKEADAKRSGKARCDEDVAEVRLEEYKEEDEESVVPYAPVEVICEEEPAVATIRAGKKQCKKPVEHQCNLCDFKCAKKSTLYYHKRQHKADDLNEIFSCNECDFKTTKKSSLYSHIKRKHRAARRCTADGLPELFCCNQCDYKNKNKYELKIHVARKHTDDFKFACETCGKKFKVKGDLTNHIRFSHREQPVICDVCGKTCLNSNSLYVHQKFAHYKAKYECQVCKRRMVTQENLNEHMVRQHEKRENVVCEECGKTFSRNSRLKVHMRIHTGDRPYTCTICSKSFARRTALKQHLLIHTGIRPYVCDICGKAFTQKPGLISHRKSHPGSHPPLPRVLIDHILNDVMKEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -