Lleu003387.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lasioglossum leucozonium
Gene Symbol
chn
Assembly
GCA_028454225.1
Location
CM052221.1:2946949-2952463[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 1.6e-05 0.0011 19.3 3.9 1 23 336 358 336 358 0.99
2 21 2.8e-06 0.0002 21.7 1.1 1 23 364 387 364 387 0.95
3 21 3.3e-06 0.00023 21.4 0.7 1 23 393 415 393 415 0.99
4 21 4.8e-05 0.0034 17.8 0.9 1 23 421 443 421 443 0.96
5 21 0.00017 0.012 16.0 2.9 1 23 449 471 449 471 0.97
6 21 0.00012 0.0082 16.6 0.5 3 23 479 499 477 499 0.97
7 21 0.0064 0.45 11.1 3.7 1 20 591 610 591 612 0.93
8 21 0.068 4.8 7.9 2.4 1 23 660 683 660 683 0.92
9 21 0.001 0.073 13.6 1.8 1 23 715 737 715 737 0.98
10 21 3.9e-05 0.0028 18.0 1.6 1 23 743 766 743 766 0.96
11 21 4.6e-06 0.00032 21.0 0.3 1 23 772 794 772 794 0.98
12 21 1.7e-07 1.2e-05 25.4 1.0 1 23 800 822 800 822 0.99
13 21 6.3e-06 0.00044 20.5 0.4 1 23 828 850 828 850 0.98
14 21 1.6e-05 0.0012 19.2 1.6 1 23 856 878 856 878 0.96
15 21 4.1e-07 2.9e-05 24.3 0.9 1 23 934 956 934 956 0.99
16 21 3.9e-05 0.0027 18.1 1.0 1 23 962 985 962 985 0.94
17 21 0.0065 0.46 11.1 1.0 1 23 991 1013 991 1013 0.97
18 21 1.2e-05 0.00084 19.7 3.1 1 23 1019 1041 1019 1041 0.95
19 21 0.00066 0.046 14.2 4.8 1 23 1047 1069 1047 1069 0.95
20 21 0.051 3.6 8.3 2.8 3 23 1079 1099 1079 1099 0.97
21 21 0.00029 0.021 15.3 0.6 1 23 1106 1129 1106 1129 0.96

Sequence Information

Coding Sequence
ATGGAATCTGAAAGCACTGTCATGCTAGAATCATGTGGAGAGGATTCAATTTTAATGCAAACCATGAAGAACATGGTTGCGGAGAATGTGCGCGCGGAGTTAGAAAGCGAAGAAGAAGGGTTTTTTGTTGTGACCGATGTTGAAGACGCACAACAGAATGTAATAGAAGTGAGCAATGAAGAATCGGCTATAACCGAGAGCGATGAACGAGTATCATGGTCGAATTTGTGCAGAGTCTGCGCTAACACCAATGATCATTTGATTCCGATATTTGAAGGGGAAGGTTTGCAGCACGACCTATGTAGTAAAATACATAAATATTTACCTATACATATATCTGAAACAGATGTGCTTCCATTGCAGTTGTGTTATCACTGTGCTGCTACCTTGTTAGCATGGCACGAACTCTTAGAAGGATGTTTAACAGCTCAAAGGCGGTTGTTAGAGATGCAAGAAACTTTGCAAGAGAAGCAGAGCTCGGAAGGCCTAGAAGTATCGGTAGACACTACTATATCTAACATAACAGAATCTTTGCATCAAGAGCAGGAAACTGTAAAGGACGAAGATTGTGGGGAAGTGGCTGATAATGATGTGAACAGGTCCAGTAGTATGCGGACACCATTTAAGGTGTTCTTAGACATGCAGAATGTATTTCGGAAGCCAAACAGAATAAAATACCAACTGCGAGAAAGAAAGCCTGCGGACAGCGGGGATTGCGATTCGGTGTGGATCAGCGTCGTGAACTCACCGCTCGATCAGTCTGCGATTACCGAGCAACTGCAAAATAACGATGCCGACGCGAAGGAAGAGGCTGTGTCCCGGCTGTACGACACGAACGGTTTAGAGAAACTGAGTTCGCAAGACGAGAGCAAACTGATCGGTGCTCGGAATGAGAGGAACGCCGAGAAAAGGATTAGAGGGAAATGCAAGCTATGCGACGTTCGAAACACCGGAGAAGCTTGCGAgcacgcgaaacagagagctaccgtcgaggttcaggagtcgtatcaatgcgtcgagtgcagcaaatgctttaaactgaaggactcgtatctgaggcatatgaggatccacagggacgagagaccgtttacttgccatgtatgcggaaaacaattccgcgactcgggtggtctgtccagacacctaaaagacgtgcatgcgaaactgaaaaacttcacctgcgacatctgcgggaaatctttcgcctcgaaggccaccagggaggatcatcgcagaacgcacacaggagagagaccgtacatctgcgactcctgtggaaagaccttcaagtcgaaggcttctctttacattcacagtaaactgcatacgaacgaatttccacatccgtgttcctattgcaacaaaaagttccgccgcaggcaggaaatgctggctcacgtgaccactcacaccggcgaaaagaactacggttgcgacgtctgttcgaaacggttccgggtgaaatcggaactagttaggcacaagctgatccactccgaaaacaagccGTTTGGTCTACCTCGGAAGAAATCCCTTGCAGCATACTGCTCGTGGCATATGACAGCAACGCGCTCGAATAATATTATTCAAACCAATAACAAATGTACAGCTCCGCAGAGACTCGTCGAATCTGGACGCGCGACGAAGTCCACTTGCAAAGAGGAGGAGAGTACAGAGTCGTCCAACGATTCCGATAGCTCGGATGTACCTGATGCGACACTCGTGCTTCCTTCCAAAGACATACAACGTCCGCGGGACAATGGTCCTCACAGGTGCGCGACATGTCAGAGAACCTTTAAAAGAGAGTGTCACTTGGCCCGACACGCAGCCAAATGTTCAAACAACGTAGACAGTATCGAAGATCGCGAAAGTATATCAAAGGACTCCGACGAGAACGTGGCCGAGGCCGAGGTCAACGACGTAAGAGAAAACTGGACATTATACAAGAAGTGCAAGAGGAAGCGTCACGAGACACACCCGTGCATGTACTGCGACCACGTCTCCAAGAAGAAGAAGCTGCTGGAGGTGCACTTGACGGAGTCGCATTCGGAATTCGTCGGTAAAAAAAACCAGAAACTGAGATGCGTTGACAAAGAGCTTGTGACGCGTGCCAGGATGGAAGTTGATGGCAGAGTGTACtaccattgcgaccaatgtgggaaaaatctatactcgccgtacacgttcttctggcacgtgcgaatacatactggcgaacggtcttacacgtgccacctgtgcggcaaacagttccgagtgaaccagggactggccagacatctcaaggacacccacgccgggataaagaacttcccctgtgacatctgcggccgaatgttcaccacgaaacggaacgcggaggaccacagacgcatacacaccggcgaacggccgtacgtttgtaacgtctgcgggaagtcattcaaacagaaggcctcgctgttcgtgcacaatcgaacgcacacggacgtatttccttacaagtgcaattactgcgggcagagcttccgcacaaggccaccgctcgcggttcacataacgaaacacaccggcgaaaaaccacacgcgtgcgacatttgcggccgacggttccgcatcaagtacgagcttaagcgacaccggttgatacacttcgatgagaaaccGTGTAGAGATCGACCGCTCGCGGTGTCGAATGCCGGTTTGGGGGGTCGCACCCGTAAATCAGAAAAGACTCCATCGGGTCGAAAGAGACGCACAGTGGAGGAGAGCGAAGAGCTGGCACGCTCAAAAATTAGGAAGAACGGGGTCACGTGTtacagatgcgacgattgtgggaaaatgttgtccacggcttacaacttgacgacccatcgaaatactcataccggggagaaaccgtacgcgtgtcaggtctgcgggaagagcttctgcacaacgtccggtttggacagacactcgcgcgccgtccacggtggaattaagcgattcgcctgcgacatatgcggccgttgcctggcctcgaaggtctcgcgagacgagcacagacgcacccacaccggggaaagaccgcacgtttgtgaaatctgcgggaaatcgtttaaacagaaggcatctctgcacgttcacagactgttccattcgaaactgccccggcaccgatgccccttgtgcgaccgttgctttccacgaaagcaggaattagataagcacgttcacggccaccgtcgggtcgatcagaggccgcacggctgcgaagcctgcggcaaacggttcctaagcaaaggctgcctcagccgccataaacgggtccacgagagccacgggaagccgtacgtttgtcccgtgtgcaacgcgagattcggccagaagcgttacctgaagagccacgcgAAGAACTACCACCGGACCCCATCGGTTTCGCTGGAATGA
Protein Sequence
MESESTVMLESCGEDSILMQTMKNMVAENVRAELESEEEGFFVVTDVEDAQQNVIEVSNEESAITESDERVSWSNLCRVCANTNDHLIPIFEGEGLQHDLCSKIHKYLPIHISETDVLPLQLCYHCAATLLAWHELLEGCLTAQRRLLEMQETLQEKQSSEGLEVSVDTTISNITESLHQEQETVKDEDCGEVADNDVNRSSSMRTPFKVFLDMQNVFRKPNRIKYQLRERKPADSGDCDSVWISVVNSPLDQSAITEQLQNNDADAKEEAVSRLYDTNGLEKLSSQDESKLIGARNERNAEKRIRGKCKLCDVRNTGEACEHAKQRATVEVQESYQCVECSKCFKLKDSYLRHMRIHRDERPFTCHVCGKQFRDSGGLSRHLKDVHAKLKNFTCDICGKSFASKATREDHRRTHTGERPYICDSCGKTFKSKASLYIHSKLHTNEFPHPCSYCNKKFRRRQEMLAHVTTHTGEKNYGCDVCSKRFRVKSELVRHKLIHSENKPFGLPRKKSLAAYCSWHMTATRSNNIIQTNNKCTAPQRLVESGRATKSTCKEEESTESSNDSDSSDVPDATLVLPSKDIQRPRDNGPHRCATCQRTFKRECHLARHAAKCSNNVDSIEDRESISKDSDENVAEAEVNDVRENWTLYKKCKRKRHETHPCMYCDHVSKKKKLLEVHLTESHSEFVGKKNQKLRCVDKELVTRARMEVDGRVYYHCDQCGKNLYSPYTFFWHVRIHTGERSYTCHLCGKQFRVNQGLARHLKDTHAGIKNFPCDICGRMFTTKRNAEDHRRIHTGERPYVCNVCGKSFKQKASLFVHNRTHTDVFPYKCNYCGQSFRTRPPLAVHITKHTGEKPHACDICGRRFRIKYELKRHRLIHFDEKPCRDRPLAVSNAGLGGRTRKSEKTPSGRKRRTVEESEELARSKIRKNGVTCYRCDDCGKMLSTAYNLTTHRNTHTGEKPYACQVCGKSFCTTSGLDRHSRAVHGGIKRFACDICGRCLASKVSRDEHRRTHTGERPHVCEICGKSFKQKASLHVHRLFHSKLPRHRCPLCDRCFPRKQELDKHVHGHRRVDQRPHGCEACGKRFLSKGCLSRHKRVHESHGKPYVCPVCNARFGQKRYLKSHAKNYHRTPSVSLE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-