Lfig018616.1
Basic Information
- Insect
- Lasioglossum figueresi
- Gene Symbol
- -
- Assembly
- GCA_028455805.1
- Location
- CM052200.1:7488984-7495405[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.084 7.8 7.4 0.5 1 23 790 812 790 812 0.97 2 11 0.0043 0.4 11.4 0.1 2 23 907 928 906 928 0.95 3 11 0.041 3.8 8.3 0.1 3 23 1115 1135 1113 1135 0.96 4 11 2.6 2.4e+02 2.7 0.1 1 11 1146 1156 1146 1163 0.81 5 11 0.014 1.3 9.8 0.4 1 20 1219 1238 1219 1240 0.95 6 11 0.014 1.3 9.8 0.5 2 23 1267 1289 1266 1289 0.95 7 11 3.4 3.2e+02 2.3 0.9 1 23 1338 1360 1338 1360 0.94 8 11 0.87 81 4.2 0.4 1 23 1379 1401 1379 1401 0.91 9 11 0.001 0.095 13.4 2.5 1 23 1642 1664 1642 1664 0.98 10 11 4.8 4.5e+02 1.8 0.2 2 23 2028 2052 2027 2052 0.82 11 11 0.087 8.2 7.3 0.2 1 23 2054 2076 2054 2076 0.97
Sequence Information
- Coding Sequence
- ATGGTGAATGCTAATAACGAAATGGACGGCACAGATTTTTCTACCACCGATTGTCCTTTGGACAGTACAATCAATATATCACCGATGTCACACACGCCAAGGAAAAATGGTCCTAGACTGTTCAAATATAAATCGTATTATTTGAAAAAGAAACCTACATTTGTTAATGTAAATCATTTACAAAATGAAAGTAGCATGGCACAAGACTTCTCCAAAGTAGTGTGTAAACCAATGACTGTAAGACTTACAAAATTACCGGATTCAGAGTTGAGAAAACTGACAGCAAAACTATCGCCTAAAACTGTACCTATCAGAAGAACTCCTATAAAAAGACCGCTTTTTAGGTTTTACGGACGTGGAAAGAAAAAAAGAAAGAACACTATTAATAAAGAGGAATGCAGCAAAGATTGCGTCCCGATTCTTACAGAAATACAGAGTAACAAAATTAATAAAACTATAGATAATAATGTTAATAAGACTGTACATAAAAATGTTTGTGAGAAAGTACCAGAAACAAATGCTAAGTATGTACATAGAAAACGGTTACAAGTTAATACAGCTTCCAAAGTACAAAAATCTAGCAACCATGGACAATGTAAAAAAGATTTATTAAAAACTGTTAAGCAACCAATCATAATATTAAATAGAATAGATGAAGTAATTAATAAGTTAGCACAATCATTTGCAAAAGTAGCTACCAATAAGCAAAACCACACGATAGAACAGCTGACAGTCACGCAAAATATAGCTGTGACACAAACCGAGGACGTTGGCTTAACTAGTACTAGCAAAAGTGATTGTTCTTGGAATAACCGAGTTGATGATAATAATAGCGAAGCAGACAGCGATGACCTGTCTCGACTCAGGTTGATATCCAGAAGAAAACGTAAACTTTTTTACGACTCCAGTGATGAGTCTGATATAGACCAATTGTATAAAGAAACATCGATACAAGCGAATACTAGTGAAAAATGCAATGAATTATGTAGAGACACTCCAGTGCAAGTAAAGAAGTTAAAATTGAGTTTACCGCAAAAGGTAGCTGCAAAGACTGCTAATAAATACACTAATGAGGAAGAAGAAGAGAATCCATTACTTAGATTTTCTAACAAAGGAAGTGTAAAAACAGGTATTGTAAATGGCGAACCACTTGTTGAAAATGAAGATGTAAATATTGAAAATAACAAAGTAGGTGTTCAGGAACCTCTGGTTCAGCAAGAAGAAAATCTGGGTATTAAGAATGTAGAAGTAGATAACAGGGAAGAAAGAATGAATGTTGAGAGTACACGAACAAAAGACAGGGAAGAAAGAATAAATGTTGAGAATATGCAAGCAGTTGTGGCACCTCAACATGTTGATGTCAATGTTGAGGGTCTTGATGCTGATGTTACGAATGAAGATACGGATATTATTACAGTGAATGTTGAAAATGAAGTAATGCGTGTTGAAAGTGACAAAGTTGATGTTGAGACTGCAAATACGAAGTGTAGTTCGGACGCTTCAGTGAATGCAGTTCAAGTAAGTGCTAAAAACATTGCAGAAGACAGTGCTTCCAGCTTGTTACCTACAGAAATAAATGTTGTACACAATTTGAGAAAACATATAAGTTCTAAACCTGCGGATGAATTAGTTGGTGAAGCTGGAGAGATACAACAGCATAAATGGAAACGATCTATATCTGAGAGTGGATTTACACAAAAATACAAATTGCCTAAACAAGCGAAGATCCTCTTGGTAGATTTGCAACATATCAAAAGTTCATGTGGTAATAAATATTCAGCTACAGAGGTTGAAAAACTAACACAAAGAAATATAGATCCGTCGCCGAATTGTAATTCTATATGTACGACTCAAAATCTTTTGATCCCAGGTGTAGCTTATTCAGAGAATGTTGCAGGTAGATTGAAGCCTGACAGCAATAATGCAGAGTCGAATGTGTGTTCTACTGAGAACGAATCGACAGATTTGAACATCTCTCTGTGTTCGGAAAATATAATAGGAAGGAAAGGAGCTGTAGGAAAAGAAAGACTTGTTGATAATGTATTGAAGAAAAACAAACTATACAAGATGATGTCCGATGGCGCCATTGGGTATTCTGTATCTTCGCATCTTCCAAAACGATCTACCAAAGAATTAGGATTGTCGAGTGTAACTGAAAGCACGATTAAGACTCTTTTGCCTTCTCCACGAAAGTCTGGACACAGGAGTTCTACAATAAAAGATCAATCGAAAGGCATAACCTTTAGGAATCAGAAGACGGATGCAAAGAAGACTACATTGATCTGTGTCCCCATAACTTCTCCAACAAAGTATGAAAAACTTACAGAGAAGAAAGATTCTAGCAAATCTAAAGAATCTTCCAATAATTATAAATGCATTGTTTGTGACCTCTACTTCGAAGATTATTCCGTTTTGCAACAGCATTTAAGTAAGCATGCAAAGCAACAACTCCCTTCATCGAAACCAAAGTGTACAGTTTCTGAAAGGTGTGGTAACGTTGAAGAAATATTACAACCTCCACCTTTGACGCCAGAGAGACAAACACTACCACAGTCTGTTACGGACAAGATTATTTGCAAAGCTGTATCTCCATCTGACAGTATTGCAGATAAAAATGTATTGTTGCATAAAAGACTGCAAAAGAAGTTGAAGTCGCAGACACACAAAGGTGGTTCGTCAAAGAAGAAAGTTTCATGTAAACCATGTAATCTGACGGACAAGTGCAGCGTGTGTTTCCAGGAATTTCCAACGAGAGCAGATTTGGCAGCCCATATTTTCCTGCACACAGAGAGTGAGCTACAAGTAGCGTACGAAGTTGCAAAGCAGAAAAGGTACCAACAAATAGAGGTTGTAGAATCGGAAACCCAAATGACAGAGGATACTGTGGCAAATGCTGCTGATTCGGTTAAAAAACTTTCAACGAATACGAACGAGTGCGAAACTAGTTCAAAAGCACAGATTGCTCAAAACCAAAGTGAGCAGACATTGAAATCCGCTAGAATTAAGGTTCCCGAAGAAGTAAAGGAAACTGATCCTAAAACAAGTATACCAACCCACGGAGAAAGCAGTACTAATAATCATGTAACTTCTGTGATAAATAAGATAGAGAAAGCAAAAACGACTAAGAGAGGCGGGTCGTCTAAAACATTGTTTACGATATGCCAGTGCCACAATAAAGCAGAAGTCAATTTTAGCTACCTGCAGATGGAGATAGTTCTGTTGTGTCACACTTGCAGAGTATTGTTCCGAAGTATGGAATGTTTTGAGACCCATTATCGTCTTCCAGAGTATTCAGTTTGTAATCAGAACCGACCGAGAAGCGACCGATCTCCAAATTTATTCTGTGCTACTTGCGGGATGATATTCAGTTCGGTTCAAGACGTGCGTCAGCATTTAGAGATGCATATCCGTTTCAAGAAAAACTGCACCATAGACTTCCGTTGCAACATCTGCAAAGTGATGTTCATTGGTATTGGATCGCTCTTTCACCTCCACTGGTCTAAACACACAAAGGATTCATTCTGGGTAGCCAGCGAACAATCGTTTCCTAAAATATCCTTGATCGACCTGAAATCCAAGAAACAGGGAGCAACGTTTAAACCAGGTGAATTTGTTGCCAATAAATATATGGATAATTACTTTTATGTTGCAGAATATGTTTGCTTCAACTGTAAAATGGCTTTCATTAACGAAAACTATTTAAAGACACATCTATCAAACTGTAAGGCAGATAGTTTAGAGCAAAGTCAGACTGTACAGTCCGATGCTACAGAAATAATGCAATTAGAGTTGCATTTAATTTGTAGTCTTTGCCAGTACGCTAGTTCCAGCAAAGTAGAGTTGTACACGCACATGAAGAACAAGCATAAATTCGCCTCGGAGCCCCAGTTTGTGTGCGTGTCTCCTAGAACTATGACGACTACATTCATTTGCAGCATTTGTATGGAGATAAGTGAGAACATCGACAAGTTCAATGAGCACTGGTTAAGCCATTACGTGAAGCAACCGTATTTCGTTTGTATATATTGCAACAAACATAGCGATAGCGTGGATGCTTTCAAAGAGCACGCGAAAGAGCACGAGTTGGCAACGAGACAGAACATATCTTGTAAGGTGAAGTATCGGGACGTTGAACACGTCTGTAAGATATGCCATGTTGGTGTTGAATCCGAGAAATTGTTAAATGAGCACAGTGTTATACACAATCCAAATGATCTGATAAGGAGAAATGGCAATGAAGTCACGACTCAGGAGAGTATACTTTACGCAATGCTGTCAACTAAGGAGCCTGATAAAGAGAACAAAGCAATAGAAAAGCAGGCCACGGAATGTTTGAAATCTGATGTAGACCTTGACAAGGAGAAATTAATTAGTATACTGGAAGGCAACGAGGAAGACGATTCTGAAAATGAGTTGGTAATCGACTTAGCAGAGTATCCAGAGAACGAGTCGGTAGTCAAAGACAGACCTAAAGAACCTACGTTGCCAGCAGCTACGTTGCCAGCAGCTACGTTGCCAGCAGCTACGTTGCCAGTAGCTACGTTGCCAGCAGCTACGTTGTCAGTAGCTACGTTGCCAGCAGCTACGTTGCCAGCACCTACGTTGTCAGCACCTACGTTGTCAGCACCTACGTTGCCAGTACCTACGTTGCCAGTACCTACGTTGCCAGTACCTACGTTGCCATTACCTATGTTGCCAGCATCTACATTGCTAACCACCGAGTTAAATGCTGCGGTAGACTATGGTACTCCAACTATTCTACAGAACGTTGTCCAGTCGAAAGACGTGATTGATGTAAAGGATGAATCTGAGAAAGATGAAGATCCGATCAAAGCAGCAGAGGCAAGCGAGCCTACGAAACAGAAGCACGGATTTCTGCGGGTGAAAGCTTTAACAGAGCTTTTAGAAGATACAAGCAACTTGTTTATGTGCCAGGTATGCAATTATTCTTGCGAGACCGCTGAATATTTGAGACAGCATTATTTGACTCATGTAACTCAAAAGCAACCGCAGCCTTCCGAGCCGGGGGAAAAGGCATTTATTCAGACTGGTAGGACGGTTCAGATTCCATTTCTCTCGAGGCTCTATCCAGGAACAGCGACCAACGCCAAACTATTAGCCTCAAAACGGAATCCTGCAGTCTCTTCTGCACAGGATTCTACGAAAACGGCGTACCACAAGAATCTGCCGGCTTGTAACATTGTCCGTAAAATAATTGTACGACATAGCGCTATCCAAACAGATGGAAACGTTCCCACAACGACGGAAAGAGGTTCTTCCAATGCACAGACTACTCAAACAGCGTCGACAGTCGATGCTAATAGCATAAACCACCGGGGATCTATAATTAGCGCGACAAACTCGATCATATATCCTAGCGGGAATTTACCTTTGACGGCAAACATGGCTATCGTGGATCCCAATAATTATACTTACAAAACTTGTTCGAAGCATCATTCAAGGAATTCGAGGGCACACAACTTATCAAAGTATCCCCAACCACAACATCTGAAAAAGGGGGTAGCCGAGTTGAATCGCAACATGGGTAGTAGTGCGGCAATGAGGAATGACAATGTTGCAAATGGTAACCAGAATTATAGTCAGGCCCAGCACGATGTTCAGAACCAGGTAAGAATGAACCCTCCTGCATCGGTGTATTATCAGTATCCGAATTCTGAGCACGTTTACACGGGAATTGGTCAGGGGCCCGTGCAAAGTCAGCAAGTGATGCAACAAGTGCCGAATCACACGGTACCGACAAATCTGCCAGCTTCCTATTATTACAAGAACCCCTCGGTAGGTGGGATGTCGATTGTTATCAATCAGGCAGCACCTGCTGCCTCAAATCTGTCTACGATGGATATAAGACAGCAGCAAGGACACCGGCCGCAAATCTATCCGGTATACACGAATCCAGTGGTATCCGTAGACTCACAATGTTATGTGCAACAGCCGCCGCAGAACATTATTGACTATTCTGGAACCGGTGAAGTGTATCAAGTGTCGCCGAATGAATACAGAGGACCGATCAGTGAACATATCACCGCCCATGGAACAACAATTCAACCCTCGGAAAAATTAACTTGCCCCTATTGCCCGAATTCCCTTACATTCGCCACTCGGGAGATGTTTGAGTTCCATCTAAACATCAGTCATAATTTCGTCTGCAATCTTTGCGGCTTATTGTTTTACAATATCGATGACATAAGGATTCATAAAATCAAACACGGTTTGATGGATAATTGA
- Protein Sequence
- MVNANNEMDGTDFSTTDCPLDSTINISPMSHTPRKNGPRLFKYKSYYLKKKPTFVNVNHLQNESSMAQDFSKVVCKPMTVRLTKLPDSELRKLTAKLSPKTVPIRRTPIKRPLFRFYGRGKKKRKNTINKEECSKDCVPILTEIQSNKINKTIDNNVNKTVHKNVCEKVPETNAKYVHRKRLQVNTASKVQKSSNHGQCKKDLLKTVKQPIIILNRIDEVINKLAQSFAKVATNKQNHTIEQLTVTQNIAVTQTEDVGLTSTSKSDCSWNNRVDDNNSEADSDDLSRLRLISRRKRKLFYDSSDESDIDQLYKETSIQANTSEKCNELCRDTPVQVKKLKLSLPQKVAAKTANKYTNEEEEENPLLRFSNKGSVKTGIVNGEPLVENEDVNIENNKVGVQEPLVQQEENLGIKNVEVDNREERMNVESTRTKDREERINVENMQAVVAPQHVDVNVEGLDADVTNEDTDIITVNVENEVMRVESDKVDVETANTKCSSDASVNAVQVSAKNIAEDSASSLLPTEINVVHNLRKHISSKPADELVGEAGEIQQHKWKRSISESGFTQKYKLPKQAKILLVDLQHIKSSCGNKYSATEVEKLTQRNIDPSPNCNSICTTQNLLIPGVAYSENVAGRLKPDSNNAESNVCSTENESTDLNISLCSENIIGRKGAVGKERLVDNVLKKNKLYKMMSDGAIGYSVSSHLPKRSTKELGLSSVTESTIKTLLPSPRKSGHRSSTIKDQSKGITFRNQKTDAKKTTLICVPITSPTKYEKLTEKKDSSKSKESSNNYKCIVCDLYFEDYSVLQQHLSKHAKQQLPSSKPKCTVSERCGNVEEILQPPPLTPERQTLPQSVTDKIICKAVSPSDSIADKNVLLHKRLQKKLKSQTHKGGSSKKKVSCKPCNLTDKCSVCFQEFPTRADLAAHIFLHTESELQVAYEVAKQKRYQQIEVVESETQMTEDTVANAADSVKKLSTNTNECETSSKAQIAQNQSEQTLKSARIKVPEEVKETDPKTSIPTHGESSTNNHVTSVINKIEKAKTTKRGGSSKTLFTICQCHNKAEVNFSYLQMEIVLLCHTCRVLFRSMECFETHYRLPEYSVCNQNRPRSDRSPNLFCATCGMIFSSVQDVRQHLEMHIRFKKNCTIDFRCNICKVMFIGIGSLFHLHWSKHTKDSFWVASEQSFPKISLIDLKSKKQGATFKPGEFVANKYMDNYFYVAEYVCFNCKMAFINENYLKTHLSNCKADSLEQSQTVQSDATEIMQLELHLICSLCQYASSSKVELYTHMKNKHKFASEPQFVCVSPRTMTTTFICSICMEISENIDKFNEHWLSHYVKQPYFVCIYCNKHSDSVDAFKEHAKEHELATRQNISCKVKYRDVEHVCKICHVGVESEKLLNEHSVIHNPNDLIRRNGNEVTTQESILYAMLSTKEPDKENKAIEKQATECLKSDVDLDKEKLISILEGNEEDDSENELVIDLAEYPENESVVKDRPKEPTLPAATLPAATLPAATLPVATLPAATLSVATLPAATLPAPTLSAPTLSAPTLPVPTLPVPTLPVPTLPLPMLPASTLLTTELNAAVDYGTPTILQNVVQSKDVIDVKDESEKDEDPIKAAEASEPTKQKHGFLRVKALTELLEDTSNLFMCQVCNYSCETAEYLRQHYLTHVTQKQPQPSEPGEKAFIQTGRTVQIPFLSRLYPGTATNAKLLASKRNPAVSSAQDSTKTAYHKNLPACNIVRKIIVRHSAIQTDGNVPTTTERGSSNAQTTQTASTVDANSINHRGSIISATNSIIYPSGNLPLTANMAIVDPNNYTYKTCSKHHSRNSRAHNLSKYPQPQHLKKGVAELNRNMGSSAAMRNDNVANGNQNYSQAQHDVQNQVRMNPPASVYYQYPNSEHVYTGIGQGPVQSQQVMQQVPNHTVPTNLPASYYYKNPSVGGMSIVINQAAPAASNLSTMDIRQQQGHRPQIYPVYTNPVVSVDSQCYVQQPPQNIIDYSGTGEVYQVSPNEYRGPISEHITAHGTTIQPSEKLTCPYCPNSLTFATREMFEFHLNISHNFVCNLCGLLFYNIDDIRIHKIKHGLMDN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00864257;
- 90% Identity
- -
- 80% Identity
- -