Lfig014920.1
Basic Information
- Insect
- Lasioglossum figueresi
- Gene Symbol
- -
- Assembly
- GCA_028455805.1
- Location
- CM052195.1:898709-900487[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00024 0.022 15.4 0.4 1 23 61 83 61 83 0.98 2 13 0.001 0.095 13.4 5.0 1 23 122 145 122 145 0.97 3 13 0.0011 0.11 13.2 5.2 1 23 182 205 182 205 0.95 4 13 0.26 24 5.8 7.1 2 23 275 296 275 296 0.98 5 13 0.00059 0.055 14.1 2.5 2 23 302 324 301 324 0.96 6 13 0.035 3.2 8.6 5.5 1 23 339 362 339 362 0.97 7 13 0.081 7.5 7.4 4.0 1 23 377 400 377 400 0.95 8 13 1.2e-05 0.0011 19.4 0.9 1 23 406 429 406 429 0.95 9 13 0.012 1.1 10.0 0.8 3 23 436 457 434 457 0.94 10 13 0.00063 0.059 14.0 0.5 1 23 462 485 462 485 0.96 11 13 1.7e-08 1.6e-06 28.4 0.4 2 23 492 513 491 513 0.97 12 13 2.7e-06 0.00026 21.5 1.9 1 23 519 541 519 541 0.97 13 13 3.6e-07 3.4e-05 24.2 0.1 1 23 547 569 547 569 0.98
Sequence Information
- Coding Sequence
- ATGGGCAGTTCCGGTCGATTCATCGTTAGGAAGGGCTCAACTTCGATGCAACTTCGCCGACCGAACGAATCAATGCCCACTTCAAAAGGTTTAGTTGAATTCGAAGAGGATCAGAAAATATTTCTATCGACCGTAAAACTCGAGCCGAACGAGGGCCAACATGGTGGCGGGTGGAACTTGTATACCTGTGGCAAATGCCAAATGGAGTTCCCGATGGAAAGCATGCTGAATCGTCACAGAATATCGCATAATCTGAACTCATGGCTCCGTAAGAAGGGTCTAAGCAACGGGTCAGCTTTCCGATCGAAGTCAAAGAAACGGGAGAAACGAGCGGAGCCGGCGAAACCGTCCGAAAAGCACAAGCACGTCTGCAGCTTCTGCGATTTCGGGTGCAGCAGAAGATCCTCGTTGACAGTTCACGTTCGGAAGAAGCATAAGTTGTCTTCGTCGAAGGAGGATACGTGTAAAGCCAGCAATCTCTGTGAAAGTCAGCCTAACTTAAGGAAACGCGCCAAGAGGAGCAGAAACGCGAAAACCAGGAGCTTCGAGTGCCACTTGTGCAACTTCGTGTGCAAAACGAACAGAACTTTAACTTCCCACATGATCCAGAATCATCAAGTGTCTGAGCTCAAAGAGAGTGATTCGAAGCAAAGCGGAAGAGCGAAATGCGAGGATGTACCAGAAGTGTGTCTAGAAGAGTATAAAGAAGACGACGAAGAGCCCATTGTTGCTTATGCACCGGTGGAAGTGATATGCGAGGAAGAGCCTACTATAGTAACGATTCGCACGGGGAAGAAGGAATGCAAGAAACCCGTCGAGGAGCAGTGCAATCTCTGCGACTTCAAGTGCGCGAACAAGACCACGTTGCACTACCACAAGCGCCAGCACAAGTTGGAGTCGCTCTCGTGCAACGAGTGCGACTTCAAGACCACGAAAAAGTCGTCATTGTACTCGCACATCAAAAGGAAACATAGAGTACCGAAACCCTGCACATCGGACGGCCTGCCGGAGCTGTTCTGCTGTAACCAGTGCGATTTCAAGACCACGAAAAAGCCGTCCTTATACTCACACATCAAAAGGAAACACAGAGTAGCGAAACCCTGCACACCGGACGGCCTGCCGGAGCTCTTCTGCTgcaaccagtgcgactacaagaacaagaacaagtacgagctgaagatacacgtcgccaggaagcacacggacgacttcaagttcgcctgcgagacctgcggcaagaaattcaaggtgaaaggcgacatgaccaatcacatccgcttcagtcacaaggagcaaccggtgatttgcgatgtctgcggaaaaacttgcctgaacagcaactcgctgtacgtgcaccagaagttcgcccactacaaggccaagttcgagtgccaggtctgcaagaggcggatggtcacccaggagaatctgaacgagcacatggtcaggcagcacgagaaaagagaggatgttgtatgcgaggagtgcgggaaaaccttctcgaggaatagccggctgaaagtacacatgaggatccacaccggcgacagaccccacacctgcaccatctgcagcaaatcgttcgctcgtcggacagctttgaaacaacacttactcattcacaccggagtcagaccgtacgtctgcgacatctgcggcaaggccttcacccagaagcccggactgatcagccacagaaagtcccatcccggatcgcacccgccactGCCAAGAGTCCTGATCGATCACATACTCAACGACGTGATGAAGGAGAATTGA
- Protein Sequence
- MGSSGRFIVRKGSTSMQLRRPNESMPTSKGLVEFEEDQKIFLSTVKLEPNEGQHGGGWNLYTCGKCQMEFPMESMLNRHRISHNLNSWLRKKGLSNGSAFRSKSKKREKRAEPAKPSEKHKHVCSFCDFGCSRRSSLTVHVRKKHKLSSSKEDTCKASNLCESQPNLRKRAKRSRNAKTRSFECHLCNFVCKTNRTLTSHMIQNHQVSELKESDSKQSGRAKCEDVPEVCLEEYKEDDEEPIVAYAPVEVICEEEPTIVTIRTGKKECKKPVEEQCNLCDFKCANKTTLHYHKRQHKLESLSCNECDFKTTKKSSLYSHIKRKHRVPKPCTSDGLPELFCCNQCDFKTTKKPSLYSHIKRKHRVAKPCTPDGLPELFCCNQCDYKNKNKYELKIHVARKHTDDFKFACETCGKKFKVKGDMTNHIRFSHKEQPVICDVCGKTCLNSNSLYVHQKFAHYKAKFECQVCKRRMVTQENLNEHMVRQHEKREDVVCEECGKTFSRNSRLKVHMRIHTGDRPHTCTICSKSFARRTALKQHLLIHTGVRPYVCDICGKAFTQKPGLISHRKSHPGSHPPLPRVLIDHILNDVMKEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00865481;
- 90% Identity
- -
- 80% Identity
- -