Basic Information

Insect: Lasioglossum figueresi
Gene Symbol: -
Assembly: GCA_028455805.1
Location: CM052195.1:926046-929738[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.1 9.4 7.1 7.6 1 23 10 33 10 33 0.96

2 17 3.5e-06 0.00033 21.1 0.3 1 23 39 61 39 61 0.97

3 17 0.0066 0.62 10.8 3.5 1 23 67 89 67 89 0.97

4 17 0.0066 0.61 10.8 0.6 1 23 95 117 95 117 0.97

5 17 7.1e-06 0.00066 20.2 2.7 1 23 123 146 123 146 0.97

6 17 0.012 1.2 10.0 1.3 1 23 163 186 163 186 0.97

7 17 0.0068 0.63 10.8 0.6 3 23 196 216 194 216 0.95

8 17 3.9e-07 3.6e-05 24.2 0.5 3 23 224 244 223 244 0.97

9 17 0.00016 0.015 15.9 0.9 1 20 250 269 250 271 0.94

10 17 0.0086 0.8 10.5 4.1 1 22 358 379 358 379 0.94

11 17 0.1 9.4 7.1 3.4 1 22 413 434 413 436 0.90

12 17 1.2e-05 0.0011 19.4 5.9 1 23 442 465 442 465 0.98

13 17 9.3e-06 0.00087 19.8 0.9 2 23 472 494 471 494 0.95

14 17 0.00025 0.023 15.3 1.3 1 23 499 521 499 521 0.98

15 17 0.0014 0.13 13.0 0.4 2 23 528 549 527 549 0.96

16 17 2 1.8e+02 3.0 1.0 1 23 555 577 555 577 0.84

17 17 0.0081 0.76 10.6 3.4 2 23 584 606 583 606 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.1	9.4	7.1	7.6	1	23	10	33	10	33	0.96
2	17	3.5e-06	0.00033	21.1	0.3	1	23	39	61	39	61	0.97
3	17	0.0066	0.62	10.8	3.5	1	23	67	89	67	89	0.97
4	17	0.0066	0.61	10.8	0.6	1	23	95	117	95	117	0.97
5	17	7.1e-06	0.00066	20.2	2.7	1	23	123	146	123	146	0.97
6	17	0.012	1.2	10.0	1.3	1	23	163	186	163	186	0.97
7	17	0.0068	0.63	10.8	0.6	3	23	196	216	194	216	0.95
8	17	3.9e-07	3.6e-05	24.2	0.5	3	23	224	244	223	244	0.97
9	17	0.00016	0.015	15.9	0.9	1	20	250	269	250	271	0.94
10	17	0.0086	0.8	10.5	4.1	1	22	358	379	358	379	0.94
11	17	0.1	9.4	7.1	3.4	1	22	413	434	413	436	0.90
12	17	1.2e-05	0.0011	19.4	5.9	1	23	442	465	442	465	0.98
13	17	9.3e-06	0.00087	19.8	0.9	2	23	472	494	471	494	0.95
14	17	0.00025	0.023	15.3	1.3	1	23	499	521	499	521	0.98
15	17	0.0014	0.13	13.0	0.4	2	23	528	549	527	549	0.96
16	17	2	1.8e+02	3.0	1.0	1	23	555	577	555	577	0.84
17	17	0.0081	0.76	10.6	3.4	2	23	584	606	583	606	0.91

Sequence Information

Coding Sequence: ATGCGAAGGTCAACGTCCCGAGCGATTCACGAGTGCGTGAAGTGCGGCGCCTGTTTCTGCCACACGAGAAAGCTCGTGGAGCACCTGAAGAACTTGCACGGGATCGACAAAGCGTTCAGCTGCGACGAGTGTGGCAAAACGTTCAGGAGCCCGATGAACATTGCTCGTCACAAGCTGATCCACACAGGTTTTAAACGATTCGCCTGCGACTTGTGCGATTACAGATCGAACCAGAAATCGAACCTCGAGTGTCACCGGCGAAGACACTCGAAGGAGTATTCGTTCGAGTGCAAGGAATGCAGGAAAGGGTTTTTCCTGAGGACGGAGTACGTGGAGCACGTGAACGTTCACACGAGGAAGGAAGTGTACCGATGCGAGCACTGCAGCAAGTCTTATCCGTACAGGAAGAACCTGATGGCACATCTGAGGCTGCAGCACGCGAACGTTCTGCCGGTCGATGCGACGAAGAGCGAGAAGGGGCACAAGCACGTCTGCAGGATTTGTTTGAACAGCTTCGCCCAGAAACTTTTGCTCGGAAGACACCTGAAGACACAGCACGGTTTGTGCGAGAAGAGCGAGCATCTGTGCGATCTCTGCGGCGCTGTGCTGTCCTCGAAGAGGAGGCTGATGGCGCACCGGCGCGGCCACGTGAACGAGAAGGTCGCGATGTGCAATCTGTGCGGCAAACAGTTCGCCAGCAAGGAGAACCTTACCGTTCATCAACGGATACACACTGGCGAGAAGCCCCACGTTTGCACGCAATGCGGCAGAGGCTTCACACAAAGAACCTCCTTGATCTTGCATCTCAGCCACTGGATCACTGATTCTGTCAAGCACAAGGATTGCGGCGAACTCAGAGTCAAGAGCCTCGACGTTCTTCTGGATCCAAAACACAAATTACTGAAAGATCCACTGGTGGACCCTCTGAAGGATATGGGCAACAAACTAGCTGTAGCGAACCGAGAGTCTCGCCACTCTCTGCGAAAATGCAACGTTGAAGGCACTGATGACGATTTTCCACCGTTAAAGCGAAGGGGTCCTAACTCAACAAGTGCAAGATTAAGCGGACCCTACGACTGCGATCACTGCGGCAGAGAGTTCTATCACAAGTGTTCGGTGACGATGCACGTGAAAACGTGTAAGGGTCGCGAGATCTGCGATCAGGAGGGAGTGTACGGCAAGAAGATGCGAGTCGTCTGCAAGATACGGATCGACAAGAAATGCGAGCCGTGGACGTATCGGTGCACGATCTGCGACTTCCACTGCACGAACCAAATGACGGCGAAGGACCACATCGTCGACAAACACAACAGCATCGTGCCCTACAAATGCACGGAGTGCCACTACAGTTTCAGGCTGAAGAACCAGCTGCAGAAGCACATCAAACGGAGGCACCCCGATTTAACGCCTATCAGTTGCAAAGTTTGCGGAGAAGTTTTCAGAAGGGCTCAAGGTCTGACTACACACTTGAGACACAACCACAACAATCCAGATTTCAAGTGCAAAATATGCAAACGTAGCATGTTCACTCGGGTCAACTTGGAACAGCATATGCTTTGGCACGATAAGATGGATCGGGTAGAGTGTTCCGCGTGCGGCATGACATTTAAATGGAAAAGGCAACTCAGGAGCCATATGAGTATCCACGTGGGCTACAGACCGTACTCCTGCCCATTCTGCGCCAAATCTTACCTCTGGAGAGCCGATCAGGAACGACACATACTGACGCACACTAACTTGAGACCGTTTATCTGTATCCTTTGCGGAATGAGCTTCACACATATCGCGGCTTTGTGTCGTCACAGAAAGAAAAAACATCTTGGACTACTGCCGCCATTGCCTTCGGTACACCTGGGGCAGCTCATTATGGACTACATTCAAGAATCGCAGGCAGCATCTAGGCAGTCTCAGGAGAATCCAGAAAGAGAGAATGGTGGAGATCTAATTGAACCGAAAGTGGAAATGTTGGACTGA
Protein Sequence: MRRSTSRAIHECVKCGACFCHTRKLVEHLKNLHGIDKAFSCDECGKTFRSPMNIARHKLIHTGFKRFACDLCDYRSNQKSNLECHRRRHSKEYSFECKECRKGFFLRTEYVEHVNVHTRKEVYRCEHCSKSYPYRKNLMAHLRLQHANVLPVDATKSEKGHKHVCRICLNSFAQKLLLGRHLKTQHGLCEKSEHLCDLCGAVLSSKRRLMAHRRGHVNEKVAMCNLCGKQFASKENLTVHQRIHTGEKPHVCTQCGRGFTQRTSLILHLSHWITDSVKHKDCGELRVKSLDVLLDPKHKLLKDPLVDPLKDMGNKLAVANRESRHSLRKCNVEGTDDDFPPLKRRGPNSTSARLSGPYDCDHCGREFYHKCSVTMHVKTCKGREICDQEGVYGKKMRVVCKIRIDKKCEPWTYRCTICDFHCTNQMTAKDHIVDKHNSIVPYKCTECHYSFRLKNQLQKHIKRRHPDLTPISCKVCGEVFRRAQGLTTHLRHNHNNPDFKCKICKRSMFTRVNLEQHMLWHDKMDRVECSACGMTFKWKRQLRSHMSIHVGYRPYSCPFCAKSYLWRADQERHILTHTNLRPFICILCGMSFTHIAALCRHRKKKHLGLLPPLPSVHLGQLIMDYIQESQAASRQSQENPERENGGDLIEPKVEMLD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -