Lfig003985.1
Basic Information
- Insect
- Lasioglossum figueresi
- Gene Symbol
- -
- Assembly
- GCA_028455805.1
- Location
- CM052188.1:2141001-2151106[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 36 0.029 2.7 8.8 0.1 2 23 17 38 16 38 0.94 2 36 0.0029 0.28 11.9 0.6 1 23 44 67 44 67 0.92 3 36 0.00012 0.011 16.3 0.1 1 23 133 156 133 156 0.96 4 36 0.06 5.6 7.8 0.2 1 23 162 185 162 185 0.96 5 36 0.062 5.7 7.8 0.8 1 23 198 220 198 220 0.97 6 36 3.5e-05 0.0033 18.0 0.9 3 23 264 285 263 285 0.96 7 36 0.028 2.6 8.9 0.8 2 23 345 368 344 368 0.95 8 36 3.1 2.9e+02 2.4 0.0 2 23 377 399 377 399 0.84 9 36 0.087 8.1 7.3 0.1 2 23 406 428 405 428 0.95 10 36 1.3e-05 0.0012 19.4 1.2 1 23 436 458 436 458 0.98 11 36 0.58 54 4.7 3.7 2 23 485 508 484 508 0.94 12 36 0.00021 0.019 15.6 3.3 1 23 511 534 511 534 0.97 13 36 0.00062 0.058 14.1 0.6 2 23 541 563 540 563 0.96 14 36 0.0072 0.67 10.7 6.1 1 21 587 607 587 608 0.94 15 36 0.0027 0.25 12.1 1.8 2 23 622 643 621 644 0.93 16 36 0.44 41 5.1 1.4 1 23 647 670 647 670 0.94 17 36 0.038 3.5 8.5 1.0 2 23 677 700 676 700 0.89 18 36 3 2.8e+02 2.5 0.2 2 23 708 730 708 730 0.94 19 36 0.069 6.4 7.6 1.1 2 23 768 790 768 790 0.96 20 36 1.1 1e+02 3.8 0.1 2 23 796 818 796 818 0.96 21 36 0.00032 0.03 15.0 0.1 1 23 881 904 881 904 0.96 22 36 0.007 0.66 10.7 2.5 1 20 929 948 929 950 0.93 23 36 0.0067 0.62 10.8 1.3 1 21 965 985 965 986 0.94 24 36 0.0021 0.19 12.4 0.4 2 23 995 1017 994 1017 0.96 25 36 0.0072 0.67 10.7 6.1 1 21 1041 1061 1041 1062 0.94 26 36 0.0027 0.25 12.1 1.8 2 23 1076 1097 1075 1098 0.93 27 36 0.81 76 4.3 1.1 1 23 1101 1124 1101 1124 0.89 28 36 9.1 8.5e+02 1.0 0.3 2 17 1131 1148 1130 1149 0.84 29 36 3 2.8e+02 2.5 0.2 2 23 1162 1184 1162 1184 0.94 30 36 0.22 21 6.0 2.7 2 23 1222 1244 1222 1244 0.96 31 36 1.7 1.6e+02 3.2 0.1 2 23 1250 1272 1250 1272 0.95 32 36 0.00032 0.03 15.0 0.1 1 23 1335 1358 1335 1358 0.96 33 36 0.007 0.66 10.7 2.5 1 20 1383 1402 1383 1404 0.93 34 36 0.49 46 4.9 1.3 2 23 1508 1530 1507 1530 0.94 35 36 0.28 26 5.7 0.2 2 23 1537 1559 1536 1559 0.94 36 36 4.7 4.4e+02 1.8 2.6 1 23 1570 1592 1570 1592 0.92
Sequence Information
- Coding Sequence
- ATGTTTTGTTTAACAGAAAATACAGATGTTAAGAGCGATAAGAAATGGTACTGTGAGTCGTGTCCTCAATTTTTCACTTCGGTCGAAAGCTTGAAAGAACATGAAGCAATTCATGACGCTGATAAGCCGTACATTTGTATTCTATGCAAAAAAGATTTTGTTCTTAAGTCTTCCTTGAGTAGACATATTCAAACGTTACATGGCGTTGATCCGTATCCTATTGTAGAAAGTGATAAATGTTTAAAGAAGATTCTTTCACGGCATTGGAATGAATCGATGGATCTCGACTATGAACGAAAAACTGCAGAATTCCCGTTATCCCCGGAGATGAATGCTGAAAACGAAGAGGATAATCACGAGAGTGGACAGGAAAATCTTATTGAAATTGAAACTGTATTTGTTTGCGAAATCTGTACCCGCGATTTTAATGATCGTGCTTCGCTTTGGCTTCATATTCGAGCCACACACAAAGAATTTGCAGCGTTCGCGTGTGGTGTTTGTTTGAAAATCTGTGCGGACAATATACAACTTCTGAATCACGTAAATATGTATCATGGTGGATCAAAATTGTTGCTCTCTGAACAACGAAGGTACAGCTGTACAATTTGTGGCAGACAACATGACTCTAGAAAGAAATTAATCGCACACGTATCCATACATAATGTAGATCCAAATTATGATCCAGCAACCTTCGTACAATTGAACAGTAACTATTATGGGGAGAATATTAATGGTAACGAAACTACGGAAACGATGCTTGACTATGAGGAAGAAGGAGACAAAGTAGACTGTTACATTTGTTACAAGTCATTTCCGAACGAAGACCATTTGATACGGCATCAGAGAAATGCACACAGATCTGAGCAGCCAATGCTGGCAGGAGACTCCTTAAATCAGTCTAATTTAAACGGTGGCGGTAACAGAGCTCAATACCACTTGTTCTTTGTTTGCGAACTCTGTGGCAGTTCACATCCCAGTAAATGGGAACGTTGGTTACACGTGAGTTCGTCTCATGCGAACGAGCCAGCCATAAAATGTGATCGCGACGACTGTGGTAAAATTTTCGCAACAAAGTTACTCAGGAACGATCACATTCAACATCATGCGATTCAAGGCCCCTCTCCGAACACGTGTGAAATTTGTGGTAAACTTTGGGGCAGCCGAGTGGATTATTGGAAGCACGTTATGGGCGTTCATTCAGATACCGTTCCATTAATTTGTGGTGTTTGTCTGAAGGTTTTCCCAAATGTGTTACAGTTAAGTACCCACGTGAAATCGAAACATTGGCCATTAACAAACGGTGATTTTAGTTGTGATATATGCGGAAGACCGTATTCGAACAAATCGAAAATGTCTAGGCATAGGAAAATCCATGGTTTCGAAGACACCTGCGACAACGGAGTTGAAAGTAACGAAAACAAACCGGACGGCCGGGTCAGAGAAACTGAATTAAGTTGTGAACATTGTACAGACTTAAAGTTCTCTAATTTAGAGAAGTTGTGTAATCATAGACGAATTGTCCATGGCCTTTTCCCTTGCGATCTGTGTAATAAATGTTACGGGAGGACCTCGCACCTATGGAAACATGTTAATAGAGTCCATAAAGGTCATGAGGATGTTACATGCCCTTATTGCTTGAAAACTAGCGCGTCGAAAGATCATTTGGCTACCCATATTTCGAAAATTCACAGGTACGAGCCTGATTCTAGAAAAGATGGCAAAGACACTAGGCAATTTAAAACCGACGAAGCCGTTCTACATTGTTGTGAGAAATGTAATAAAGGATTTCACAAGCGATACCTGTTACGTAGACACATGAAAGGATGTCAGAATTATAGGAAGGACCCTGGTGCGTTGCTTACTCGTTGCAGAGCTTGCGAAAGAATTTTCAAAGACCGAGCTAGCTTACAGAAGCATATAGAAAATCATCATAGCACGTACACTTGTCATCTTTGCAATGAAACGATCACCTCGAAATTAGGAATTATGACGCACAACAGAGTGAAACATATGGATCATCCGGATTTAACTTGTAATTTCGGAGCTTGTAAAAAGTTGTTCAGGACAAAGGAAGATTTGGAATCGCATAAGAAAGATCACAGATATCATACGAATCCTAACGTTTGCGATTTCTGCGGCGACACTGTCGAGAATAAACTGAAATTGAAGATGCACGTGCTGTCTCTTCATCGTAACGAAATCGGAGTTTCTTGTGGAGCATGTTTAATCCCGATGAAAGATCCGAAAGAGCTTAAGGGTCATGTAGAAGAAGTTCACTTCAGTGTTCTCTCGAAACCTAACACCTGTCAAGTATGCGGCAAACAGTATGCTTCGAAATGGAAAGCTTTCGACCATACTAAGAAACGTCATGGCAAGGTATTCCGCACCTGTAAACAATGTTTAGCTGTTTTCACAGAAGATTCCGCCGTCAGAGATCATTATGAAACGGTACATAATGTTCCAAAAGATCAACTAGCGGCGTTCGAATACAGGTTGGACATCGGGTCGAAACATGACGATTATGAAATTGAGTCTCCCGACATTATTGTGAAAGAAGAACCAGACGACTTGGAGTACGATGTAGATCTGTGCGACGAGGATTCCAGCGATTCGAAAAGAAGAAGATCGTTGACCGATACATTTGACTGTGAAATGTGTCCTGAGATGTTTGCGAATAGTGACGCCCTTTCGATGCACTATCGTAACATGCATAATACAGATCCGGAAAGAATGTTCAAGAGACTGAAGCAGGAAGAACAAAGAAGAATCCGTGGAAAACTAAGTTTTGCTTGTAAGAATTGTAAAAAACAATTTTGTACAAAGACGTTGTATTGGAATCATATTGGAACTTGCAGGAGAAACGCTTTGCGGAAGGAAACGAATTGTGGCCTTTTCCCTTGCGATCTGTGTAATAAATGTTACGGGAGGACCTCGCGCCTATGGAAACATGTTAATAGAGTCCGTAAAGGTCGCGAGGATGTTACATGCCCTTATTGCTTGAAAATTAGCGCGTCGAAAGATCACTTGGCTACCCACATTTCGAAAATTCACAGGTACGAGCCTGATTCTAGAAAAGATGGCAGAGACACTAGGCAATTTAAAACCGACGAAGCCGTTCTACATTGTTGTGAGAAATGTAATAAAGGATTTCACAAGCGATACCTGTTACGTAGACACATGAAAGGATGTCAGAATTATAGGAAGGACCCTGGTGCGTTGCTAACTCGTTGCAGAGCTTGCGAAAGAATTTTCAAAGACCGAGCTAGCTTACAGAAGCATATAGAAAATCATCATAGCACGTACACTTGTCATCTTTGCAATGAAACGATCACCTCGAAATTAGGAATTATGACGCACAACAGAGCGAAACATATGGATCATCCGGATTTAACTTGTAATTTCGGAGCTTGTAAAAAGTTGTTCAGGACAAAGGAAGATTTGGAATCGTATAAGAAAGATCACAGATATCATACGAATCCTAACGTTTGCGATTTCTGCGGCGACACTGTCGAGAATAAACTGAAATTGAAGATGCACGTGCTGTCTCTTCATCGTAACGAAATCGGAGTTTCTTGTGGAGTATGTTTAATCCCGATGAAAGATCCGAAAGAGCTTAAGGGTCATGTAGAAGAAGTTCACTCCAGTGTTCTCTCGAAACCTAACACCTGTCAAGTATGCGGTAAACAGTATGCTTCGAAATGGAAAGCTTTCGACCATACTAAGAAATGTCATGGCAAGGTATTCCGCACCTGTAAACAATGTTTAGCTGTTTTCACAGAAGATTCCGCCATCAGAGATCATTATGAAACGGTACATAATGTTCCGAAAGATCAACTTGCGGCGTTCGAATACAGGTTGGACATCGGATCGAAACATGACGATTATGAAATTGAGTCTCCCGACATTATTGTGAAAGAAGAACCAGACGACTTGGAGTACGATGTAGATCTGTGCGACGAGGATTCCAGCGATTCGAAAAGAAGAAGATCGTTGACCGATACATTTGACTGTGAAATGTGTCCTGAGATGTTTGCGAATAGTGACGCCCTTTCGATGCACTATCGTAACATGCATAATACAGATCCGGAAAGAATGTTCAAGAGACTGAAGCAGGAAGAACAAAGAAGAATCCGTGGAAAACTAAGTTTTGCTTGTAAGAATTGTAAAAAACAATTTTGTACAAAAACGTTGTATTGGAATCATATTGGAACTTGCAGGAGAAACGCTTTGCGGAAAGAAGAGGAACTTTCGTCTTCGCAGAACGACACGTTGGATAATCAAGAAGGTGTGCTTGATAACCACGAAGAAATTTTGAAAAACAACAATCAAATCAAAAAAGAAGAAAGTACATCGAACTTGAATATCCCAGACTTTAATCTATTCGAAGACATAAATCTTCAATTGTCAGGTCAAAGACCTCTTCCGAATCTGATGCCGTTATCTCAGAGGGTGAAATCGTCGATGAAATGTTCGAGAAAAGATTCGAGAAAAGTGTACGACGAATCAACAAATACAGAATGTGCTTGCGAAGTCTGTGGAAAACAGTGGCCAGCGAAGAAACATTTATGGCAACATTTAATTCGCTTCCATCGAGCAGAAGCTGCGGTCACCTGCGGAGTGTGTCTGAAACTCTGCAAGGACTACGATGATTTAGCAGAACATTTAAAAGCTGCACACGCTGCGATTCTTTCTTGCGAAGGAAACAACTTCACATGCAAAACTTGTGGCAGGTATCATAATGCACGCAGTAAGCTATTGTTACACACAAGCATTCATATCGGACACGCAAGCAATGGCACTACATGTCCGAAATGCTATAAGAATATTACTGATGAAACTGATCATTCTAATACGTGTACTGGAAAAACAGAAGAGGAGCATTTGAAGAACGAGAAGAAGCAGGAAGGAAGCCTGATAACGGACGATGCTATGATAGAAGAAGTGGAAGAAGGGGACTTCGAGTCTGAGGCGGAAGAGGCAGATTCAGCGGAATCAGATAGCGGTAGTAGCACGGAGGTAGAAGAAGACAATGATTCTGAAGGAGAATCCAGAGCAACAGGAGAAATTACGTACAATTCAGATACCGATGACGATTCCGAAGAATTGGGTAATCTAGAAATGGATAAGAATATGCAGCACTTTGCTTTGGAAGGCCTTCAGGAATCCAAAGATACTGAAGCAGGGAAAAACGACGTTGATTTGTCGGATGACTATGGTCCTCCTGTGCTTAGCCCTATGATGCCTCTACTAACTGGAAATATGTCTGGAGAACCGTCAGCTGGCCGCAAACTTAGTTCACTTGGGACGCTAGCGAACAAAGAAATGGGAATTTGTAACTTGGCAGAGATTCAAAATCATTCCTCTCCGAAATCGGTGAATTTCTACGGGAAAGGTTTGTCTAATAATGAATCTTTGGATTTTGAATCTGAAGCATTTATAAATCGAAGCGAGGAGGAGTATGAAGACGCGAAAAATGAATACGATGAAAATTCTATGGAAGAGAATGAAGACAGTAGGGAGAATGATGGTAACGAAGAAGCAGCGGACAACGAAGAAAACGAAGAAGTCGAGCAGAACGGGGATAAAGAAGGGAGTTGTGAGATGGAGGTGAACGAAGACAGCGAAGGAAGCGAATTGTACGAAGAAACTGAAGATAATGAGGACAATGAGTCGAATGAAGAAAATGAAGAAATTGAAGATAACGAAGACAACGAGGAACAAGAACAGAAATATGAGAACAACGAGAATGTAGAAAACGAAGAGAGCGAGGATAATGAAGAGAACGAGGATAAAGTAGGAGGCATGCAATTGGATGATTTAGAGAATGCTGTACTAATGGTGACCGACGGAAATGAAATACTGATACAACAAGATATATTAGAGGATGGAATTGAAAACGTAAATCAAACGTACGTTTATTCTACGCTAGCTTACAGTACTGACGAAGACAGTGACGATGCGGGAAAATGA
- Protein Sequence
- MFCLTENTDVKSDKKWYCESCPQFFTSVESLKEHEAIHDADKPYICILCKKDFVLKSSLSRHIQTLHGVDPYPIVESDKCLKKILSRHWNESMDLDYERKTAEFPLSPEMNAENEEDNHESGQENLIEIETVFVCEICTRDFNDRASLWLHIRATHKEFAAFACGVCLKICADNIQLLNHVNMYHGGSKLLLSEQRRYSCTICGRQHDSRKKLIAHVSIHNVDPNYDPATFVQLNSNYYGENINGNETTETMLDYEEEGDKVDCYICYKSFPNEDHLIRHQRNAHRSEQPMLAGDSLNQSNLNGGGNRAQYHLFFVCELCGSSHPSKWERWLHVSSSHANEPAIKCDRDDCGKIFATKLLRNDHIQHHAIQGPSPNTCEICGKLWGSRVDYWKHVMGVHSDTVPLICGVCLKVFPNVLQLSTHVKSKHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGFEDTCDNGVESNENKPDGRVRETELSCEHCTDLKFSNLEKLCNHRRIVHGLFPCDLCNKCYGRTSHLWKHVNRVHKGHEDVTCPYCLKTSASKDHLATHISKIHRYEPDSRKDGKDTRQFKTDEAVLHCCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSTYTCHLCNETITSKLGIMTHNRVKHMDHPDLTCNFGACKKLFRTKEDLESHKKDHRYHTNPNVCDFCGDTVENKLKLKMHVLSLHRNEIGVSCGACLIPMKDPKELKGHVEEVHFSVLSKPNTCQVCGKQYASKWKAFDHTKKRHGKVFRTCKQCLAVFTEDSAVRDHYETVHNVPKDQLAAFEYRLDIGSKHDDYEIESPDIIVKEEPDDLEYDVDLCDEDSSDSKRRRSLTDTFDCEMCPEMFANSDALSMHYRNMHNTDPERMFKRLKQEEQRRIRGKLSFACKNCKKQFCTKTLYWNHIGTCRRNALRKETNCGLFPCDLCNKCYGRTSRLWKHVNRVRKGREDVTCPYCLKISASKDHLATHISKIHRYEPDSRKDGRDTRQFKTDEAVLHCCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSTYTCHLCNETITSKLGIMTHNRAKHMDHPDLTCNFGACKKLFRTKEDLESYKKDHRYHTNPNVCDFCGDTVENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKELKGHVEEVHSSVLSKPNTCQVCGKQYASKWKAFDHTKKCHGKVFRTCKQCLAVFTEDSAIRDHYETVHNVPKDQLAAFEYRLDIGSKHDDYEIESPDIIVKEEPDDLEYDVDLCDEDSSDSKRRRSLTDTFDCEMCPEMFANSDALSMHYRNMHNTDPERMFKRLKQEEQRRIRGKLSFACKNCKKQFCTKTLYWNHIGTCRRNALRKEEELSSSQNDTLDNQEGVLDNHEEILKNNNQIKKEESTSNLNIPDFNLFEDINLQLSGQRPLPNLMPLSQRVKSSMKCSRKDSRKVYDESTNTECACEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCKDYDDLAEHLKAAHAAILSCEGNNFTCKTCGRYHNARSKLLLHTSIHIGHASNGTTCPKCYKNITDETDHSNTCTGKTEEEHLKNEKKQEGSLITDDAMIEEVEEGDFESEAEEADSAESDSGSSTEVEEDNDSEGESRATGEITYNSDTDDDSEELGNLEMDKNMQHFALEGLQESKDTEAGKNDVDLSDDYGPPVLSPMMPLLTGNMSGEPSAGRKLSSLGTLANKEMGICNLAEIQNHSSPKSVNFYGKGLSNNESLDFESEAFINRSEEEYEDAKNEYDENSMEENEDSRENDGNEEAADNEENEEVEQNGDKEGSCEMEVNEDSEGSELYEETEDNEDNESNEENEEIEDNEDNEEQEQKYENNENVENEESEDNEENEDKVGGMQLDDLENAVLMVTDGNEILIQQDILEDGIENVNQTYVYSTLAYSTDEDSDDAGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -