Basic Information

Insect: Lasioglossum figueresi
Gene Symbol: -
Assembly: GCA_028455805.1
Location: CM052195.1:873302-878154[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0012 0.12 13.1 1.3 2 23 391 413 391 413 0.97

2 16 0.00086 0.08 13.6 2.2 1 23 417 439 417 439 0.98

3 16 0.0035 0.32 11.7 1.8 2 23 446 468 445 468 0.93

4 16 2.6e-05 0.0024 18.4 0.2 1 23 507 530 507 530 0.97

5 16 0.0026 0.24 12.1 3.5 2 23 541 562 540 562 0.92

6 16 0.00059 0.055 14.1 1.0 1 23 566 588 566 588 0.95

7 16 1.8e-05 0.0017 18.9 1.4 1 23 594 616 594 616 0.97

8 16 3.7e-06 0.00035 21.1 0.9 1 23 622 645 622 645 0.97

9 16 7.4e-05 0.0069 17.0 1.6 2 23 901 923 900 923 0.96

10 16 2.7e-05 0.0025 18.4 3.1 1 23 927 949 927 949 0.98

11 16 0.00094 0.087 13.5 3.9 1 23 955 978 955 978 0.97

12 16 0.00036 0.034 14.8 0.1 1 23 1011 1034 1011 1034 0.97

13 16 0.0012 0.11 13.1 6.0 1 21 1044 1064 1044 1065 0.96

14 16 0.00013 0.012 16.2 6.2 1 23 1069 1091 1069 1091 0.95

15 16 5.6e-06 0.00053 20.5 2.3 1 23 1097 1119 1097 1119 0.98

16 16 1.5e-05 0.0014 19.2 1.7 1 23 1125 1147 1125 1147 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0012	0.12	13.1	1.3	2	23	391	413	391	413	0.97
2	16	0.00086	0.08	13.6	2.2	1	23	417	439	417	439	0.98
3	16	0.0035	0.32	11.7	1.8	2	23	446	468	445	468	0.93
4	16	2.6e-05	0.0024	18.4	0.2	1	23	507	530	507	530	0.97
5	16	0.0026	0.24	12.1	3.5	2	23	541	562	540	562	0.92
6	16	0.00059	0.055	14.1	1.0	1	23	566	588	566	588	0.95
7	16	1.8e-05	0.0017	18.9	1.4	1	23	594	616	594	616	0.97
8	16	3.7e-06	0.00035	21.1	0.9	1	23	622	645	622	645	0.97
9	16	7.4e-05	0.0069	17.0	1.6	2	23	901	923	900	923	0.96
10	16	2.7e-05	0.0025	18.4	3.1	1	23	927	949	927	949	0.98
11	16	0.00094	0.087	13.5	3.9	1	23	955	978	955	978	0.97
12	16	0.00036	0.034	14.8	0.1	1	23	1011	1034	1011	1034	0.97
13	16	0.0012	0.11	13.1	6.0	1	21	1044	1064	1044	1065	0.96
14	16	0.00013	0.012	16.2	6.2	1	23	1069	1091	1069	1091	0.95
15	16	5.6e-06	0.00053	20.5	2.3	1	23	1097	1119	1097	1119	0.98
16	16	1.5e-05	0.0014	19.2	1.7	1	23	1125	1147	1125	1147	0.98

Sequence Information

Coding Sequence: ATGTCCGGAGGTGTGTTCGTGTTAGATGAGGAGACAACGAGTACTGCTTCGGCATTCATAAACCATAGTTTCACTGTGATATCAACGATCGCGGATACGCGTAACCCGGGGCAACCGCTTTTTGTAGACTGTAAGGGAGGCACGAATATCGAATACCATGCAGAGGAATCGATCGAGATCAAATCGCCGCCGATCTCCGATGAAGAGCTGGACGACGACGACTACGCGTATGCCGAGGAAGAGCTGGAGGACGAGGACCAAACCGACGTCGACAACGAGAGCCACATACGCATCACGAGTTGTCACTCCTTGATAAACGAGATCCACGACGATTCCTTGTCGAGCAAAGTGACCACAGATGTCAGCAACGACTCCCCGATGGACACAGTCAAGGAAGATCCCGCTGCGAAAAGAATTCCGACGGTGGTGGTGCCAGTTATCAACCCAGAGACCAAAACGATCAAGAATACAGTGGTGCCGGTTGAAATGATAGATGATACAGGGATGAACATAATCAAAAGCGTGCTGGTACCGATGCCGACTCAGGATGGGTCTGCGTGCTACGAGGTTAAGAAAGTTTTAGTACCGATCCAACCGCGGCCGAGTTTGCCAGTTGAAACACCGATTCGACCAGCTCCAAGCTTGCCGGTTGAAATTCCGATCGGACTTCGATCGCCGTCTTCGAGTTTGCCGGCTAAAATCACGATTCCGCCACTGTCACGTTTGCCGGCTAAAATCGCGATTTCACCACTGTCACGTTTGCCGGTTAAAATACCGATCCAACCACCGCCAAGTTACCCAGTTAAAATGCCGATTCAACCACCTTCGAGCTTCCCGATTAAAATTCCGATCCAACCAGCACCGAGTTTGACTGTTCAAGCACCGCCTAAGTTTCGGATGCCTCAAATAGAACCGTTACCAACCAAGCCACCAATCGAGCTACCAGCCAAACCAACGTCCAATCTACCAGCTAATCCAACAACGAACCTATCAGCCACGTCATCGAACAAGGTACGAAAGATATTACCGAAGCTGATGCCGATCGAGACAGTGGAAGAACCGTGCCTGGAAGTGGCGGAAGATGAGCTGGAAGAGGATCCTTTGAAAGATAAGAGAATCATAGGCGACGATCTCGACGCGATGGATAAGATGTTAGACGATCTGCGGAACACGTGCCCCCTGTGCCCATTGAGCTTCAACACCCAGCAGCAGATGGACAGGCATTTCCGTCGACGGCACAAGAACCAATTCCGCTGCAAGAAGTGCCATTTCAGTTATGATTCCGCCGAGGCCCTCGAGGACCACAAGAAAATCCACGACAAGGACACCTACGTAGAGTGCAACTTGTGCCATCGGAAGTATAAACGCATGAGCGGGCTGATGGCGCATCGAGTTCGCAAGCACACCACCGAAGATCCAACATCGTTGCGCGATCAGGTCCCGGAAGAATGCATACCTAACTTCAACGCCGAGGACCCGGATAATACTTGGGGACGGCGTCAGGTGCTGGGAAGAAGCTATTCCTGCGAGAGGTGCAACAAAGTGTATCCGCGCAAGTCCTTCCTGATCGCCCACGAACGTATCGCTCATGGGATCGGCATCGATGACTCGAAACCGCTTCAGTGCAAGATTTGCAACAAGACCTTCCAAAACAGGAAACAATACTACAAGCACGACAGATCGCACAGCAAGATCTACCTgtgctccctatgcggcaagaagctgacgaccaaagcctcccttcggctgcacaatatgcgacacaatgatgagagacccttcaagtgttcggtttgcggcaagtgttttactgccaaggtcacgctcaaagtccacgagctgatccacagtggcctgagaccctacatatgtgacatctgcgggcaaagcttcactcaacggagtagcatgatggtgcatcgcaagaaacaacaccctggaaatcaccccccTCCGCCCCGCGTGAATTTGGTTAATATTCAGAAACGGATTTCGACGACCGCGGAAACCATACAGTACCCAGCGCAACCGCTTTTTGTAGAATGTAGCGGGACGCCTCTTCTGGACCAAGATCAAATATCGATTAAAATGAAGACATCCCCGATCACTGACTTCAAGGAAGAGCAGTGCATGCTGAGCGACACTGAATGCGATCACTCCATGACAGATGACGGCCTGTACCTGGGTGACTCGAATTATCTTTCTTTCCCCAGTGATGTCACGCAGACCGAGGTCAGCAACGATTCTGTGAAATACGATGCAAGCAGCAAGCCAATATCGTCGTTACTCGTACCGGTCAGGGACCCTGAAACGAAGATAATTCAGAACGTGTTAGTGCCGCCGGAAGTGCAGGACGAGTCTGGAAAGAACCTAATCAAGAGCATCCTGATACCGGTCCAGGAACCGGATGGAACGGTGACTTATGTGATCAAGAACGTCATGGTCCCGATTAAACCCGAGAAACAAGTGAGGCAGCCTGTCCCTGTTCTCGTCCCTATCCCTATCCCTGTCCCTGTCAAAGAAACACCGCCTAAGCCAGATAAAATCGAAAAAAAAGAAAGGAAAAAGAAGACGAAGTTGAGGAAAAAGGTTGAGGACGATGAGAAGAAGGAAAAGGATATAAAAACCGAGGAAGCAGAGCAAGCAGAGTCTGCGGAGCCTAACGAAGAGGTTGACTTGATACTGGCAAATCTCCGAACCACCTGTCCGTTCTGTCAGAAGAGCTTCAAGAGCGAGCAGCAGGTGAACAAGCATGTTCGTAGGGAACATCAGCAACCATTCCGCTGCAAAAAGTGTCATTATAGTTATACAAAAGAGGAGGAGctcgagaagcacatggaggtccacgagaaggacacgtaccacaagtgtcccttctgtcacttaaagtacaagagaatgtctggattgagagctcatcagatccgcgagcacagcaacgttgatccagtgtgcctccgcgatcgcGTCAAGGAAGGCGTTGTCAACGCTCCAGAGGACTCGCCGACCGGAAGCGCGGGAACGAGAATTTACGTCTGCCAGGTCTGCGGGAACGACTATGCTCAGAAATCGTACCTGATCGCCCACAACCGCATTGCTCATGGCTATCAAAGGAACGAGGTTAGGCGCTTcaagtgtcgtgtctgcaaaaagaaattcacctttcaacacagcctcgagagtcatatgtgcaacgagccaagcttcctctgttcccattgcggcaagaaattcagcaccaattacactatgctgctacacatgagacaccacactggcgaacgaccgcatcagtgcacagtttgccagaaatcgttctccagggcggtgtcgctgaggatccacaagctcactcacacgggcgagaggccatatatctgcgatctttgtggacaaagtttcactcagaggacctccatgatgacccatcgcaggaaacaccccggaaatcatcctccgcCGCCTCCTTTGTTCCTCAGTAGGCGTATGACCAACCTGAACGAAGAGAAAGAGTGA
Protein Sequence: MSGGVFVLDEETTSTASAFINHSFTVISTIADTRNPGQPLFVDCKGGTNIEYHAEESIEIKSPPISDEELDDDDYAYAEEELEDEDQTDVDNESHIRITSCHSLINEIHDDSLSSKVTTDVSNDSPMDTVKEDPAAKRIPTVVVPVINPETKTIKNTVVPVEMIDDTGMNIIKSVLVPMPTQDGSACYEVKKVLVPIQPRPSLPVETPIRPAPSLPVEIPIGLRSPSSSLPAKITIPPLSRLPAKIAISPLSRLPVKIPIQPPPSYPVKMPIQPPSSFPIKIPIQPAPSLTVQAPPKFRMPQIEPLPTKPPIELPAKPTSNLPANPTTNLSATSSNKVRKILPKLMPIETVEEPCLEVAEDELEEDPLKDKRIIGDDLDAMDKMLDDLRNTCPLCPLSFNTQQQMDRHFRRRHKNQFRCKKCHFSYDSAEALEDHKKIHDKDTYVECNLCHRKYKRMSGLMAHRVRKHTTEDPTSLRDQVPEECIPNFNAEDPDNTWGRRQVLGRSYSCERCNKVYPRKSFLIAHERIAHGIGIDDSKPLQCKICNKTFQNRKQYYKHDRSHSKIYLCSLCGKKLTTKASLRLHNMRHNDERPFKCSVCGKCFTAKVTLKVHELIHSGLRPYICDICGQSFTQRSSMMVHRKKQHPGNHPPPPRVNLVNIQKRISTTAETIQYPAQPLFVECSGTPLLDQDQISIKMKTSPITDFKEEQCMLSDTECDHSMTDDGLYLGDSNYLSFPSDVTQTEVSNDSVKYDASSKPISSLLVPVRDPETKIIQNVLVPPEVQDESGKNLIKSILIPVQEPDGTVTYVIKNVMVPIKPEKQVRQPVPVLVPIPIPVPVKETPPKPDKIEKKERKKKTKLRKKVEDDEKKEKDIKTEEAEQAESAEPNEEVDLILANLRTTCPFCQKSFKSEQQVNKHVRREHQQPFRCKKCHYSYTKEEELEKHMEVHEKDTYHKCPFCHLKYKRMSGLRAHQIREHSNVDPVCLRDRVKEGVVNAPEDSPTGSAGTRIYVCQVCGNDYAQKSYLIAHNRIAHGYQRNEVRRFKCRVCKKKFTFQHSLESHMCNEPSFLCSHCGKKFSTNYTMLLHMRHHTGERPHQCTVCQKSFSRAVSLRIHKLTHTGERPYICDLCGQSFTQRTSMMTHRRKHPGNHPPPPPLFLSRRMTNLNEEKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -