Basic Information

Insect: Lasioglossum calceatum
Gene Symbol: ush
Assembly: GCA_963966675.1
Location: OZ016550.1:8522913-8527431[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.0061 0.67 11.1 0.0 3 20 285 302 283 304 0.92

2 8 4.5e-05 0.0049 17.8 1.3 1 23 334 356 334 356 0.98

3 8 0.13 14 7.0 1.8 3 20 396 413 395 415 0.93

4 8 0.016 1.7 9.9 4.4 2 21 630 649 629 650 0.94

5 8 0.072 7.9 7.8 0.0 3 20 678 695 676 697 0.91

6 8 0.018 1.9 9.7 0.0 2 23 736 757 735 757 0.95

7 8 0.017 1.8 9.8 3.0 1 23 763 785 763 785 0.98

8 8 0.1 11 7.3 0.5 3 21 878 896 877 897 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.0061	0.67	11.1	0.0	3	20	285	302	283	304	0.92
2	8	4.5e-05	0.0049	17.8	1.3	1	23	334	356	334	356	0.98
3	8	0.13	14	7.0	1.8	3	20	396	413	395	415	0.93
4	8	0.016	1.7	9.9	4.4	2	21	630	649	629	650	0.94
5	8	0.072	7.9	7.8	0.0	3	20	678	695	676	697	0.91
6	8	0.018	1.9	9.7	0.0	2	23	736	757	735	757	0.95
7	8	0.017	1.8	9.8	3.0	1	23	763	785	763	785	0.98
8	8	0.1	11	7.3	0.5	3	21	878	896	877	897	0.92

Sequence Information

Coding Sequence: ATGAGCGAAGATAGGGGATGTAGATGGAAGATCTTGCGGGGCTATCTGTCGGCGGGATCTAGCCTGGAGATGAAACAGAGATTGTCGGACGTGTTCAGGCCAGGTTCTGGGAAAGACGGGGAGGATGAGGAATGGAGCGACTCGGAGAAGACACCATCGGTGAGCAGTGGCGTGGACGGCGGTGGATCTGCGGTTTCCAGCCCGGTCGCGCCGGTCGTCGAGGAGGAATCGAGCCTTCCTCCACCGCCCAGACTGAATCCCCCTTCCTCGGTCTCGATCGCGAATTCGACCGTGGACGATATCAGATTGAAATTCAGCGTGCTCTCTGAAGACGCTCGAAAACGGCTGGCTAGTCTTACCGAAGATATCGAGGTTACCAGGAGCCTGAGAGACCGACATGCTACCTCGAAGCCCAATCAGACCCGAGAGTCGAGTCCGAAAGACACGGACGAGGATGCGATGCCCGTGGTCAAGGAGGAGGACTGCCAGCCGAGGTCCTCGTCATCCTCGTCCTCCTCGATCCGAAGGCGAGATTCCATCTGCAGGAGAGACTCCGAGGACTCCTCGAGGCGGTCGAACGCCGACGATCCACCTTCAGAGAAGAAACTGAAGCTCGATGACGAAGCAGCACCAAGACTGAGACTCAATGCTAGTCTGGCGACGGATCCAGCCCTTCGACCCGCCACCGTGGCCGCGCTCACCGTCAAACCGGAAAATACCTCGCCGCCAAACCCTGTTCCGCCTTTGCCTGCTGGCTTGAAAAATGCAATCGCATCGGGTCGGCTGTTCGTACTGCCAACGGACGGCAAGGAGACGATCACGGTGGAGCCAGCAAGGCCCACGCTCCTGATCTGTCCGCCTTGCGGCATCCGTTTCAGCTCAGCGAGCACCCTCGAGGCCCACCGCACGTTCTACTGCGCGCATCGTCCTCGGCTAGAAGAGGAGACCACgaacgacgaggacgaggagaaGTCGAACAAATTCGAGGTCAGGAAGGCGTACGCGTGCCCGCATTGCTCGTACAGCGCGGACAAGAAAGTGTCCCTGAACAGACACATGAGAATGCACGCTGCATCCCCGGCGCCACCCACGATACCACCAGCTCCAGCTGTCCCTGCAACGCCAGCGACCGGCGGCGCCGCGACACCTTCGAACGGGTCGTTGAACGAAGAGGCGGAGAGATATTGTAGAAATTGCGACATCAAGTTCAGCTCGCTGAAGACCTACAGAGCGCACAAGACTCACTATTGCAGTACCAGGCACGTGGTGAAGGATACGCCGCCAGCCAGCGCGACGTCCTCGTCGGTGAAAGCGTCGCCGCCGACGAGCGCGAGTCCTGGGGACTCTCCGCCACCGCAACCCTGTCTCGCACTACCCACCAACCCCATTCTCATCGTACCCTACTCGCTTTTCCGGGGAGCTAGTGTGCTGGCCGCGCCGACTCTGCCTGCTCCCGACACTGCGTGCTTCCTCCTGCCAAATGGTCACCTCCAACCAATGACGAGAGGTCTCGCCACTTCAGCTCCAAACACCGTGGTCGAACCTCCGCCTGTTCTACGGGCAGCAAACAAGCCAACAACGCCAGCATCGGTTGTGGCGTCGTCCACGTCTCCACCTGGCTCCGTTCCATTGGATCTAAGTGTCCGGAAGTCGCCGGCGCATCAAGACGAGAAAGAGAACAGAGTATCGCCTGCACCCTCTTCTCTGCCTCCACCACCTGGCAGCCCGAGATCCAGAGGAAGCGGCAGTCCTAGAGCCAGGTCGATCGCTTCAGCTCCAACAACAGTTGGTACTGTTCCACCACCCCCACCAACAGAGCTTGCTCTGAGACTAGCAGAGCTACCTCCACCCCCTGTTCCTGGGGTCCTTGTCAAACAGGGTGTCTCGAGGTGCAAAGAGTGCAATATCGTCTTCTGCCGCCACGAGAACTTCGTTGCGCATAAGAAACATTATTGCCAAGCAAGGGAAACCAGCGTTAGCAACAGTCCACCCCCGCCGGGCACACCATCGCCGCCGTTGGTGCAGTTGATATGCGCTGCGTGCGGTATCAAGTTCGCATCGATGGACAATTTGGTGGCCCATCAGGCGTTCTACTGTCCCAAGAGGCCGGAGCCGCAGGAACATCACTCGAGATGCACCAAGTGCAAGGCCATAATTGAGCCTGGCTCCACCCACACGTGTACCAGTGGAACGACTGGAGGTTGGAGATGTCCTGTTTGCGGTGCTGTGAGTCCCACCGCAGGGGCTGCGCAACGTCACATGGACGCTCATCAGGGTGTCAAGGCTTTTAGATGCACGATTTGTCACTACAAGGGTAACACGTTGCGCGGCATGAGGACGCATATCAAAATGCACTTTGAGAAGCGGGGAACCGACCTACAAGAGGAAAACTACATAACGTGTGTGCTGGACGATGACACGGTCCTTCCAAATCCAGAGCCGGCTCCAGCCACAACACCTAAAGAAATTCCTGCGGAGGTGCAGGTGAACGGCAAGACGGAGGTCCGGAAGAGTCCTCAGCCTCCGCCGCCCCCGCCACCTCCGACGGTGACGAACAAAGTGAAGCAAGAACGGGAGGACACGCCGCCTCCAGAGGAAAGTCTGGACCCCAACAAGAGCGGGCCCCGTTACTGTCGGTCGTGCGACATCAGCTTCAACTATCTGAGCACGTTCATAGCGCACAAGAAGTTCTACTGCTCGAGTCATGCCGGCGAGGCgagcaacaacaacaataacaacaataataacaacaacTCGAGCAGCCACGCCACGCCACCCCCGAGTGGCAGGACTGAAGCATCCGTACTTTAA
Protein Sequence: MSEDRGCRWKILRGYLSAGSSLEMKQRLSDVFRPGSGKDGEDEEWSDSEKTPSVSSGVDGGGSAVSSPVAPVVEEESSLPPPPRLNPPSSVSIANSTVDDIRLKFSVLSEDARKRLASLTEDIEVTRSLRDRHATSKPNQTRESSPKDTDEDAMPVVKEEDCQPRSSSSSSSSIRRRDSICRRDSEDSSRRSNADDPPSEKKLKLDDEAAPRLRLNASLATDPALRPATVAALTVKPENTSPPNPVPPLPAGLKNAIASGRLFVLPTDGKETITVEPARPTLLICPPCGIRFSSASTLEAHRTFYCAHRPRLEEETTNDEDEEKSNKFEVRKAYACPHCSYSADKKVSLNRHMRMHAASPAPPTIPPAPAVPATPATGGAATPSNGSLNEEAERYCRNCDIKFSSLKTYRAHKTHYCSTRHVVKDTPPASATSSSVKASPPTSASPGDSPPPQPCLALPTNPILIVPYSLFRGASVLAAPTLPAPDTACFLLPNGHLQPMTRGLATSAPNTVVEPPPVLRAANKPTTPASVVASSTSPPGSVPLDLSVRKSPAHQDEKENRVSPAPSSLPPPPGSPRSRGSGSPRARSIASAPTTVGTVPPPPPTELALRLAELPPPPVPGVLVKQGVSRCKECNIVFCRHENFVAHKKHYCQARETSVSNSPPPPGTPSPPLVQLICAACGIKFASMDNLVAHQAFYCPKRPEPQEHHSRCTKCKAIIEPGSTHTCTSGTTGGWRCPVCGAVSPTAGAAQRHMDAHQGVKAFRCTICHYKGNTLRGMRTHIKMHFEKRGTDLQEENYITCVLDDDTVLPNPEPAPATTPKEIPAEVQVNGKTEVRKSPQPPPPPPPPTVTNKVKQEREDTPPPEESLDPNKSGPRYCRSCDISFNYLSTFIAHKKFYCSSHAGEASNNNNNNNNNNNSSSHATPPPSGRTEASVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00983220;
90% Identity: iTF_00625779;
80% Identity: -