Basic Information

Insect: Lasioglossum calceatum
Gene Symbol: chn
Assembly: GCA_963966675.1
Location: OZ016546.1:8277635-8280477[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 6.7e-06 0.00074 20.4 3.9 1 23 336 358 336 358 0.99

2 7 1.1e-06 0.00013 22.9 1.1 1 23 364 387 364 387 0.95

3 7 1.4e-06 0.00015 22.6 0.7 1 23 393 415 393 415 0.99

4 7 2e-05 0.0022 19.0 0.9 1 23 421 443 421 443 0.96

5 7 7.1e-05 0.0078 17.2 2.9 1 23 449 471 449 471 0.97

6 7 4.8e-05 0.0053 17.7 0.5 3 23 479 499 477 499 0.97

7 7 1e-05 0.0011 19.9 1.8 1 23 505 528 505 528 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	6.7e-06	0.00074	20.4	3.9	1	23	336	358	336	358	0.99
2	7	1.1e-06	0.00013	22.9	1.1	1	23	364	387	364	387	0.95
3	7	1.4e-06	0.00015	22.6	0.7	1	23	393	415	393	415	0.99
4	7	2e-05	0.0022	19.0	0.9	1	23	421	443	421	443	0.96
5	7	7.1e-05	0.0078	17.2	2.9	1	23	449	471	449	471	0.97
6	7	4.8e-05	0.0053	17.7	0.5	3	23	479	499	477	499	0.97
7	7	1e-05	0.0011	19.9	1.8	1	23	505	528	505	528	0.97

Sequence Information

Coding Sequence: ATGGAGCCTGAAAGCACTGTCATGCTGGAATCATGCGGAGAGGATTCGATCTTGATGCAAACCGTGAAAAACATGGTAACGGAGAATGTGCACGCAGAGTTAGAAAGTGAGGAAGAAGGGTTTTTCGTTGTGACCGACGTGGAAGACCCGCAGCAGAACGTAATAGAAGTGAGCAACGAAGAGTCGGCTATAACCGAGAGCGAGGAACGAGTATCATGGTCGAATTTGTGCAGAGTCTGTGCCAATACCAATGATCATTTGATTCCGATATTTGAAGGAGAAGGTTTGCAGCACGATCTGTGTAGTAAAAtacacaaatatttacctataCATATATCTGAAACAGATGTGCTTCCATTGCAGTTGTGTTATCACTGTGCTGCTACCTTGTTAGCATGGCACGAGCTTCTAGAAGGATGTTTAACAGCGGAAAGGAGGTTGTTAGAGATGCAGGAAACTCTGCAGGAGAAGCAGAGTTCAGAAGGCCTAGAAGTATCGGTAGACACTAGTATGTCTAATATAACAGAATCTTTGCATCAAGAGCAGGAAACTGTAAAGGGCGAAGATTGTGGGGAAGTGGCTGATGATGATATGAACAGGTCCAGTAGTATGCGGACACCATTTAAGGTGTTCTTAGACATGCAGAATGTATTTCGGAAGCCAAACAGAATAAAATACCAACTGCGAGAAAGAAAGCCTGCGGACAGTGGGGATTGCGATTCGGTGTGGATCAGCGTCGTGAACTCGCCGCTCGATCAGTCCGCAATCACAGAGCAACTGCAAAATAACGATGCCGACGCGAAGGAGGAGGCTGTGTCCCGGCTGTACGACGCAAACGGTTTAGAGAAACTCAGTTCGGAAGACGAGAGCAAACTGATTGGCGCTCAGAATGAGAGGAACGCCGAGAGAAGGATTCGGGGGAAGTGCAAGTTATGCGACGTTCGAAACACCGGAGAAGCTTGCGAGCACGCGAGACAAAGAAATACCGTCGATGTTCAGGAGTCGTATCAATGCGTCGAGTGCAGCAAATGCTTTAAACTGAAGGATTCCTATCTAAGGCACATGAGGATCCACAGGGACGAGAGACCGTTCACTTGCCACGTATGCGGAAAACAATTCCGCGACTCGGGCGGCCTGTCCAGGCACCTAAAAGACGTGCACGCGAAACTGAAAAACTTCACCTGCGACATCTGCGGGAAATCGTTCGCCTCGAAGGCCACCAGAGAGGACCATCGCAGAACGCACACAGGAGAAAGACCGTACATCTGCGACTCCTGTGGAAAGACCTTCAAATCGAAGGCTTCTCTTTACATTCACAGTAAACTGCATACGAACGAATTTCCACATCCGTGTTCCTATTGCAACAAAAAGTTTCGCCGCAGACAGGAGATGCTGGCCCACGTGACCACACACACCGGCGAGAAGAACTACGGTTGCGACGTCTGTTCGAAACGGTTCCGGGTGAAATCGGAACTCGTTAGGCACAAGCTGATCCACTCCGAAAACAAGCCGTTCGTTTGCGTCAAATGCGGCCTGACTTTCCGACAGAAACGATATCTGAACAATCACGTTAAAAGCAGACACGTTGAAACACTGCGAGCATGCTAG
Protein Sequence: MEPESTVMLESCGEDSILMQTVKNMVTENVHAELESEEEGFFVVTDVEDPQQNVIEVSNEESAITESEERVSWSNLCRVCANTNDHLIPIFEGEGLQHDLCSKIHKYLPIHISETDVLPLQLCYHCAATLLAWHELLEGCLTAERRLLEMQETLQEKQSSEGLEVSVDTSMSNITESLHQEQETVKGEDCGEVADDDMNRSSSMRTPFKVFLDMQNVFRKPNRIKYQLRERKPADSGDCDSVWISVVNSPLDQSAITEQLQNNDADAKEEAVSRLYDANGLEKLSSEDESKLIGAQNERNAERRIRGKCKLCDVRNTGEACEHARQRNTVDVQESYQCVECSKCFKLKDSYLRHMRIHRDERPFTCHVCGKQFRDSGGLSRHLKDVHAKLKNFTCDICGKSFASKATREDHRRTHTGERPYICDSCGKTFKSKASLYIHSKLHTNEFPHPCSYCNKKFRRRQEMLAHVTTHTGEKNYGCDVCSKRFRVKSELVRHKLIHSENKPFVCVKCGLTFRQKRYLNNHVKSRHVETLRAC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00183455;
90% Identity: iTF_00866883; iTF_00866199; iTF_00864147;
80% Identity: -