Lcal021361.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lasioglossum calceatum
Gene Symbol
Prdm15
Assembly
GCA_963966675.1
Location
OZ016552.1:6688560-6691217[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 6.1e-05 0.0066 17.4 4.3 1 23 246 268 246 268 0.99
2 12 0.025 2.7 9.2 2.1 1 23 273 295 273 295 0.96
3 12 0.00013 0.014 16.4 1.2 3 23 306 326 305 326 0.98
4 12 0.00038 0.042 14.9 4.6 1 23 401 423 401 423 0.98
5 12 0.0057 0.62 11.2 1.6 1 23 428 452 428 452 0.91
6 12 3.1e-06 0.00034 21.5 1.3 1 23 491 514 491 514 0.95
7 12 3.1e-06 0.00034 21.5 0.8 1 23 547 569 547 569 0.99
8 12 0.00012 0.014 16.5 3.8 1 23 583 605 583 605 0.96
9 12 0.00016 0.018 16.1 4.7 1 23 611 633 611 633 0.98
10 12 0.0014 0.16 13.1 3.2 1 23 639 661 639 661 0.98
11 12 4.9e-05 0.0053 17.7 6.5 1 23 667 689 667 689 0.98
12 12 0.00024 0.026 15.6 0.3 1 21 695 715 695 716 0.93

Sequence Information

Coding Sequence
ATGGAGATCGAAAGCAAAGACAGAGTTCTGCCCGATGATACTGGCGATCTCTGCCGCGTTTGTCTTACAGCGAATCTAAATAACCAATACATTTTTGGCGCTACTCGAAATGATTCGAGTACCACGGACACGGACACGTTGAACTTCTCTGATAAATTTCGCTTGTGCAGCGGCGTGGAGATGACAGAGAACGATGGTCTACCTGCCACTGTCTGCATGCAATGTATGATTAAAGTAAACCAAGCGTATGAATTAAGGATACAATGTCAACGATCGGATACATGGCTGAGGGAACTCTGTGGCAAATTGACAACGATATACAACGGCAATCGGTTGAGAGCTACCAAGGATCAGTGCTGCCAGACAGATTACACCTTCAACTCTAGTTTCGTAAAAATAGAGGTAGATATACCTTCCACAGTCGCTCAAGAAGAGTCTTTGGATTTTAAAGATGCAGAAGTAATTAATGAATCCAACGAATCCATCGAGACCAATAGTCATCTAAGCAACGTTAGTATTAAAAGGATTCCAGCAGGATCTGAAAAGAGTTCAGTGGGCCGAGAAGCATATAGAACACGAAGGACTACTATGTTCAAAAGGGTGACTTCTATGGAGAACTTAAGAAACCATAAAGAGAGGCAGAGGCAATACATAAAGAAGAACGCGAACGTTAAACGAGATATTGTGGAGAATGATCATTCAGATAACGTTAGGGATATGGTTTCTCAGAGTCTTTACACCTGTTCAAAATGTTCTAGGTGTTACTCCAGTAAAAGGTCGCTGGACAGGCACATAGCAACGCACAATGAAAAGAAATTCACATGCGACAAATGTAGCAAACAATTTCTGCAACTGAATGATCTGATGAAGCATAATAAACTGCACAAAGTCAAGGAGAAAGCTAAGCCAGTATTATGTAGCATATGCAATAAGAGTTTTAAGAAAACCGACACTATGGTGAGACATTTAAACATCCACAAAAGAGCGAATCCGAAAGAGGTTCTCTCGATCTTGAAAGAAATCAGGGACAAACGAAAATTCGAGAATATTAGCGAGGAGCCAGTTAATGAAACGAACGATGGTAGAAAAGAAATTAGAGAGACGTATGTAAATAACGAGAGTAGAGACACGGTTAAGAAGTACGCCATAGATTCCGATATACTGAACGCCAGAATCGATGCCTTCGAAAACGCGGCATTTCATCGTTGCAAATACTGCGATAAATCTTGTCCCACGGACAAGTTGCTTCAGGATCATTTGCTGACTCACGCCGAGAAGAAATTCGTATGCAACGTTTGCAACATGAAATTCTTCCGACTAGACAGACTGGAGAGTCACAAGAAGCGGTACGGACACAACGAGGACGAGACAAGCTTGGAGATTCAAAAGCCTTCCGACGAAAAGTCGGCCATTAAACTAATCAACAGTTGGATACGAGAGGAGCTCGACTCGGACAACGAGGAGAAGGGTTTCCCTTGTAAAATATGTGGAAAGTCCTACGACACTAAGAGGTCCTTATCAAAGCACCAGCTGAACACGCACAACTCGAAGGATGAGGGATGCACGAGTTGCGGCGACAACTGCGCTTGCGAGGAGAAGGACAAGGACCAGCAGAAGGCGACCGAGATATTGAAGCCGTACCGCTGCGAGGAGTGCAACAAGTCCTTCGAGAAGGAAGTGAAGCTGCAGAGACACGCGAGGATTCACGAGCGCTCCAAAGAACCGGAGGATGCGAACTTCAAGCGATATTTATGCCACATATGTAGCAAGACGTTCCGACAGAACACAGGACTGATGTTCCACATGAGAACGCACACCGGCTACAAGCCACACGTGTGCAAGTACTGCGGCCGTGGATTCACGTCGAATTCGAACTGCATCAACCACGAGAGGACTCACACTGGGGACAGGCCATTCGTATGCCACTTTTGCAGCGCAGCTTTCGCCAAGTCGTGCACCCTTAAAGCGCACATCACGACGCACACCGGGGAGGCTAACTACCATTGTAAAACCTGCGGGAAATCGTTCAGGAGGCTGAAATACTTGAAGGAGCACAGGTTCACGCACACCGGCGAGAAACCGTACGCCTGCAAGATCTGTGGCACAGCGTACAGCCACAATGGTAGCTTATTCGTGCACGAGAAAAAGTGCAGAGCACAGTATCAGAACGCCCAAAGCTATTGTCAATCAAAGACAGGCGTGACTCCCATCATCACCATTATGCCCCAGAACCATCTCAACGAGATCATCGTCCCGTTGAACGTTCAAGACGGCAAAGCGTACGACATGCAGAGCATGAACTCGCCCACCATAGACAGCGTGAGCCCTGTGACCACACCGGATTTGCATGTTCACCCGAGTACTGATAACTCAGACGTCTCGCTGTCTGTAAAAAATTTTGCTCTTATCGGGCACGTGTTTCAATCGTAA
Protein Sequence
MEIESKDRVLPDDTGDLCRVCLTANLNNQYIFGATRNDSSTTDTDTLNFSDKFRLCSGVEMTENDGLPATVCMQCMIKVNQAYELRIQCQRSDTWLRELCGKLTTIYNGNRLRATKDQCCQTDYTFNSSFVKIEVDIPSTVAQEESLDFKDAEVINESNESIETNSHLSNVSIKRIPAGSEKSSVGREAYRTRRTTMFKRVTSMENLRNHKERQRQYIKKNANVKRDIVENDHSDNVRDMVSQSLYTCSKCSRCYSSKRSLDRHIATHNEKKFTCDKCSKQFLQLNDLMKHNKLHKVKEKAKPVLCSICNKSFKKTDTMVRHLNIHKRANPKEVLSILKEIRDKRKFENISEEPVNETNDGRKEIRETYVNNESRDTVKKYAIDSDILNARIDAFENAAFHRCKYCDKSCPTDKLLQDHLLTHAEKKFVCNVCNMKFFRLDRLESHKKRYGHNEDETSLEIQKPSDEKSAIKLINSWIREELDSDNEEKGFPCKICGKSYDTKRSLSKHQLNTHNSKDEGCTSCGDNCACEEKDKDQQKATEILKPYRCEECNKSFEKEVKLQRHARIHERSKEPEDANFKRYLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKYCGRGFTSNSNCINHERTHTGDRPFVCHFCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHRFTHTGEKPYACKICGTAYSHNGSLFVHEKKCRAQYQNAQSYCQSKTGVTPIITIMPQNHLNEIIVPLNVQDGKAYDMQSMNSPTIDSVSPVTTPDLHVHPSTDNSDVSLSVKNFALIGHVFQS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01071159;
90% Identity
iTF_00762726;
80% Identity
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