Lcal023215.1
Basic Information
- Insect
- Lasioglossum calceatum
- Gene Symbol
- -
- Assembly
- GCA_963966675.1
- Location
- OZ016554.1:9792302-9803338[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 2.6e-05 0.0029 18.6 0.9 2 21 92 111 91 112 0.93 2 18 0.0003 0.033 15.2 0.3 1 21 115 135 115 138 0.90 3 18 0.00085 0.093 13.8 4.0 1 23 147 169 147 170 0.96 4 18 1.8e-05 0.002 19.1 1.2 1 23 176 199 176 199 0.96 5 18 1.9e-05 0.002 19.1 0.4 2 23 206 228 205 228 0.97 6 18 0.14 15 6.9 0.3 1 23 233 255 233 255 0.97 7 18 0.001 0.11 13.6 0.1 2 23 264 284 263 284 0.97 8 18 1.6e-06 0.00018 22.4 0.1 1 23 290 312 290 312 0.96 9 18 0.0019 0.21 12.7 0.7 1 23 318 340 318 340 0.94 10 18 9.3e-06 0.001 20.0 0.6 1 22 429 450 429 450 0.97 11 18 2 2.1e+02 3.3 0.4 1 20 482 501 482 505 0.76 12 18 5e-06 0.00055 20.8 2.5 1 23 510 533 510 533 0.96 13 18 1.3e-05 0.0014 19.5 0.2 2 23 540 562 539 562 0.96 14 18 0.0014 0.15 13.1 1.3 1 23 567 589 567 589 0.98 15 18 4.5e-06 0.00049 21.0 1.4 3 23 597 617 596 617 0.98 16 18 5.8e-07 6.3e-05 23.8 1.1 1 23 623 645 623 645 0.98 17 18 0.00028 0.03 15.4 0.1 1 23 651 673 651 673 0.97 18 18 1.9e-06 0.00021 22.1 1.3 1 23 679 701 679 701 0.99
Sequence Information
- Coding Sequence
- ATGCTCCCAATATCCCTGTACACGTTTAGTACCTCGCCGTTAAAGTATTCCAATTCCCCGCTGGACCCTTTAGGGGACGTTCCGAGTATGCACGAGTTCTCGCAGTTCAAAATCGAGAATGTGTACACCTTGGTGGACGACGAGGGATCGGTCGGGCATGGGCCACCGGAAGGAGGAACAAAGAACGTCGCTAATCATCTTGCCAAAGAGGAATCTGCAAGAAGAAGCCAAGTTGTGCCAGGCCCGTACAACGGGAAAGGCCGCAGGCCTCTGTACTGTGATCGTTGTGGCAAAGTGTTCTACCGGAAGTCGCACATGCTGAAGCACATACTGTCGTACAAATACACGTGCACCACCTGCGACAAGCCGTTCCGACTGAAGAGAGAGTTGATCGTGCACTCCGAAGCAGAGCACGGGCATCTAGAGCTGACGGAAATGTACACGTGCACCGAATGCAGCTACAAGAGCTCGATGAAGAGCACGTTGAGAACCCACATTCTCCGGCATCACAGCACCAAGTACTCGTACTTCTGCAAGATTTGCCAGAGGGGGTTCAAGGTGAACAGCGACATGAACCAGCACATGAGGCTGATGCACTGCGCCGACCGTGTCATCAAGTGCAACGTCTGCAACGCCACGTTCAACAACGACAAGGCCCTGCAGAATCACATGAGGAGCATCCACAACAGGTTCTACTACCAATGCGTGCAATGCAGGCGATACATGGCTTCGCCGGAGAGCCTCGAGCAACACAAGCAATGGCACGCGGAGCAGAAGAGCTCGAGCGTAACATGCCCGAAGTGTGGCAAAGTACTTCGAGGTCGGTCGCTTACGGCGCACCTGCGAGTGCATACGGGCCAGAAACCTTTCACCTGTCCGATCTGCGGGAAATCCTTCCGCAGGCTCAGCCCCATGGAGAGACACGTTGTCATACATACCGGCAAAAAGCCGTACGTCTGCGACGTTTGCGGACAAATGTTCTCGCAAAGGCCCGCCCTGCTCTGCCACAGGGAACGACATCCTGGACCGCTGCCGCCATTGCCAGTAGTGTCCATTAAAAACATAGTTAAAGACATTATCGTGGCGTACAGCTGCGTGAAACACGATTTACTGAACGATCCTCTGGTGGATCCTCTGATCGATCCGGACAACAAACGAGGCTTCCCTCTGCGAAAATGCAAAGTAGAAGTCCCCGATGACGATGGGCCATCGCTGGATCAAATCGGGCCGGCGTCGTCGAAGATGACGTTAAAGATGTCACGAAAGATAAAAATCGACGAACCCTTCGAATGCGATCACTGCAGCAAAGAGTTCTACAGCAAGAGTTCGTTGGCGGCGCACGTAAGAACGTGCGAGCAATATCTTCGCGAGATCTACGACCAGGAGATCCGAATGTGGTACGACGGGAAGATACGGATCGACAAGAAATGCGAGCCGGTGGCGTACCGGTGCACGGTCTGCGACTACAAGGACACGGACAAGTTGACGGTGACGAACCACGTGATCGACAATCACAGCAGCTACCCCTACAAATGCACGATATGCAACAAGGGTTTCAGGCGGAAGAACGACCTGAGGGATCACACCTATATGAGGCACGGCGATTCACTGTGTACCAGTTGCAAGGTTTGCGGGAAAACTTTCAAAAATGGTGTAGCTGTGAAGGCACACATGAGATCCGCGCACAACAATCCAGATTTCAAGTGCAGAATATGCAAACGCAGCATGTTTACTAAGATCAACCTGGAGCAGCATATGCTCTGGCACGAGAAGGTGAACGAGGTAGCGTGTCCCTTGTGTGGCATGACTTTTAAACGGAAAAGGCATCTCGCGGGCCATATGAACAGGCACGACGACTTGACGCAGTACCCCTGTCCCTTGTGTGGCATGACTTTCAAACGGAAAAGACACCTCTCCGGCCATATGAACGTGCACAAAGACTTCAAACCGTACTCCTGTCCACTCTGCGGCAAAACCTTCCGCTGGAGAGCCGCTCAGGAGCGACACATACTGATACACACTAGCTTGAAACCGTATGTCTGTAACATTTGCGGACTGGCATACACTCATTTGTCGAGTTTGAGCACTCACAGAAGGACACATCCTGGACCACTGCCGCCATTGCCCACGATATGCGTGAGAGAGATCGTCATGGACTACATTCAACAATTGCAGGCAGTATCCAGGGAGCGTCAGGAGAATCCAGAAAGAGAGGATGATGGGGGTCTAATTCAACCGAAAGTGGAATTGGAAGTGGTGGAAGAGGAAGCGTTGGACTGA
- Protein Sequence
- MLPISLYTFSTSPLKYSNSPLDPLGDVPSMHEFSQFKIENVYTLVDDEGSVGHGPPEGGTKNVANHLAKEESARRSQVVPGPYNGKGRRPLYCDRCGKVFYRKSHMLKHILSYKYTCTTCDKPFRLKRELIVHSEAEHGHLELTEMYTCTECSYKSSMKSTLRTHILRHHSTKYSYFCKICQRGFKVNSDMNQHMRLMHCADRVIKCNVCNATFNNDKALQNHMRSIHNRFYYQCVQCRRYMASPESLEQHKQWHAEQKSSSVTCPKCGKVLRGRSLTAHLRVHTGQKPFTCPICGKSFRRLSPMERHVVIHTGKKPYVCDVCGQMFSQRPALLCHRERHPGPLPPLPVVSIKNIVKDIIVAYSCVKHDLLNDPLVDPLIDPDNKRGFPLRKCKVEVPDDDGPSLDQIGPASSKMTLKMSRKIKIDEPFECDHCSKEFYSKSSLAAHVRTCEQYLREIYDQEIRMWYDGKIRIDKKCEPVAYRCTVCDYKDTDKLTVTNHVIDNHSSYPYKCTICNKGFRRKNDLRDHTYMRHGDSLCTSCKVCGKTFKNGVAVKAHMRSAHNNPDFKCRICKRSMFTKINLEQHMLWHEKVNEVACPLCGMTFKRKRHLAGHMNRHDDLTQYPCPLCGMTFKRKRHLSGHMNVHKDFKPYSCPLCGKTFRWRAAQERHILIHTSLKPYVCNICGLAYTHLSSLSTHRRTHPGPLPPLPTICVREIVMDYIQQLQAVSRERQENPEREDDGGLIQPKVELEVVEEEALD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00860559; iTF_00863406;
- 90% Identity
- iTF_00860559; iTF_00863406;
- 80% Identity
- -