Lcal023471.1
Basic Information
- Insect
- Lasioglossum calceatum
- Gene Symbol
- -
- Assembly
- GCA_963966675.1
- Location
- OZ016555.1:433518-434649[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.3e-08 5.1e-05 23.5 0.0 18 38 53 74 41 78 0.81
Sequence Information
- Coding Sequence
- ATGCCGAAGCCCTCGAATTTCTCATCGCGCGCGAACACGATTCGAGATGTTCGATCGGCAAAAATCGTGTCAACTCCAAGAAAATCGCCCGCAAACAAAGAAATTAATTCTAATGCCGTGCTTAGTGCCGTTAAAGATCATTTGCTGGAGAAGAAAGGCATAAGAAAGGCTGCCAAAGAATATGACGTTGATAAGAGCACGTTACAGCGTTATGCGAAGAAAGTTGGCAGCCATTTTGACGATATTTGCACAGTTTGCGATGAAGAATTGACGGAATTTTTGCGCATATCTCATATGCACATACCATCGAACATGGtatgttttttgttattatttttgcCATTCTTTTTAACTTCTTTGGCCACTTACtgtctttaa
- Protein Sequence
- MPKPSNFSSRANTIRDVRSAKIVSTPRKSPANKEINSNAVLSAVKDHLLEKKGIRKAAKEYDVDKSTLQRYAKKVGSHFDDICTVCDEELTEFLRISHMHIPSNMVCFLLLFLPFFLTSLATYCL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00860310;
- 90% Identity
- iTF_00860310;
- 80% Identity
- -