Lcal014531.1
Basic Information
- Insect
- Lasioglossum calceatum
- Gene Symbol
- -
- Assembly
- GCA_963966675.1
- Location
- OZ016545.1:17088115-17095008[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.5 5.4e+03 -2.2 0.1 21 27 568 574 566 574 0.86 2 2 1.5e-09 2.3e-06 27.8 0.0 7 38 747 778 743 781 0.91
Sequence Information
- Coding Sequence
- ATGCCGAAAATTGTCCTCGAACCCTTTGACGGCAATTATACGAAGTGGACCAGCTTCCGGGACCTCTTCCGATCGATGGTGATCAACAACCGACAACTAACCGACGTAGAGCGCCTGCATTACTTGAAAACAAGCGTTACTGGGGAACCTGCCGACCGTTTACGTCATATTCCTGTCACCGACGAAGACTTTCCGCGTGCTTGGAAGCTTCTCGAGAAGGAATATGACAACGTCCCCGTTCTGGTCAATGCCCAACTAGGCGTGCTTTTGTCTCTCCCGTGCATGAAGACTGAAACGGCTTCCGAACTCAAGACATTGATGCACGGAACTCAGAATGCCGTTGAGGACACCAACAAAGCTTCGATGAAGTGGAGGAAAGGTGAAGGGTGCAGAAAAGGTCTACCTCTGAAGGACAGGATGGCAGCTTTACGCCGTCGGAAGCAGGATCAGACTGCAGATCCATGCACGGTAGGGAACGCATCATCGGAAATGCAAGACGATACGAACGAAGATATCGAAAATATCGTTTTGCACGAAGATGGGAACATCGACGTAGATCGTTTACGTCCTGCCGAGATCAGTGGACAGAGCATCGTCAACTTTGCGCATGTTTTTGCAGAATTGCAAAAACTATCCGAGCATTGGAAGAATGTATGCCGGTTCGTTGATCTTGTTATAACGAAAACGCTTCGTCAGGGTCTCAAGACGAAATATTTTGTCGTATGTCATATGTGTCATTTCCAAGGAAATTTCTGCAACGAATCGCCAGACGACATCATATTGGATGTCAATACAAGTGCCGTTTGTGGTACTATATTGACAGGGACCGGTCACAAGCAGTTACAACAACTTCTGGCTGCTATGGATGTTCCATGCATGAATAGTAAAACATATTTAGAGTACGCAAAGCATGCATCCAAAGCTTTCGCAATACCTGTAGATGTACAAATTCGAGCGGCTAGCGAAGCGGAACAAAAATTAGCAATCGAGAGAGGTGATGTCATTAACGGTATTCCGCACATACCTGTGGTAACAGACGATTCATGGATGAAGAGATCGTATCGCAGTGGTTACAATTCCCCATCCGGAACGGCTATGATCATAGGTTACCATACAAGAAAAGTATTGTTCCTTGGtgtacgtaacaaatattgtgTTATCTGCGCAAGAGCAGCAAATAGTGTTACGACACCAAAAGAACATGTATGTTATAAGAACTGGGGAGTCAATCAGAGCTCCACCAGTATGGAAAGTGACATCATCCTCGAAGGCTTCAGATGTAGTATCGAAATGCATGGATTAATGTATAATCAATACATTGGCGATGGCGACAGCAATGTATTGAAAAAATTGAGGGATTTCCCACCATACCCGGACATTGATGTGCAGAAGATTGAATGTGTAAATCATCTTCTACGCAATCTGTCAAATAAAATACAAGATGCAGGTAATGTTGGTGGTCGAAAATactcaaaattgaaaaaaattgttaagAATAGTGTAATGAAAATTCGAAACGCTGTTACGAAGGCTGCTGAGCATCACCGGAACAGTACAGTAGAATGGCGAGACAAAATTGCTGGTTTAATGAGAGATATTGACAATATACCCAACCATGTATTTGGTGAACATCGAAATTGCGCCTCGTACATTTGTGACGGAGTTCCAAAAAAAGACGAGACAAATCTTGTTCCCCAATTACAAGCGGCACGGATATATGAAAAACTAGAAAATATAATGCAACGTATCAAACAAAATGCGGAAAGTTTGCTATACAATTATACCAGCAATTCTGTTGAAAGTGATAATGCCATTATTTGCAAACTAATTGGCGGCAAACGTACGCATTTAGGGCAAAGAGGCTCTTACCAAACGCGTGTACAAGCAGCCGTCGTGCAATGTAATAGTTTCACACCGATGAGGAATGTACCAAAAGAATCGGGTCTCGCTATTCGTAAATCAAGATATTCTCGCAAAAGAGGACCTGATAAAGATTATGGTGCAAACGCGGAAGAGCCTGATGATGATCCTGAAACGTTCGAACAGCTGAAGTCCGATCATTACCGAAAGTTGCGAAGCAACCAGCAGAATTTGGAAGAATGCGAGCGTAATACGCGAAAACAGCATAAAGACCCGCATTGGCATTGCCAACGTAAGCTCCTGCTGACTGCTTCGAATTTCGGAAAAGTTTGTTCCAAGAAAGTaATTGAAAAATCTCATTCCGCTGAGACCACCGTACAAGCTCTCAATGCAGTGGGTGGTGGGTTATCGTTCAGAGAAGCCGCTAACCTGTTTAAGATTCCAAAAAGCACACTGCAttctaaaatgaaaaatttaagttcTGTGGATGCTAAGAAAGGACCACCAAGTGTACTGTCTAAGACAGAAGAAGATGACATAGAAAAATGGATTATTTACTGTGCCGAGCAAAGATTTCCAGTAACAAAAGATATTGTATGTGAGCAGATTATCAGTTCTACGATCAATTTGGAACTTCAACGCTAG
- Protein Sequence
- MPKIVLEPFDGNYTKWTSFRDLFRSMVINNRQLTDVERLHYLKTSVTGEPADRLRHIPVTDEDFPRAWKLLEKEYDNVPVLVNAQLGVLLSLPCMKTETASELKTLMHGTQNAVEDTNKASMKWRKGEGCRKGLPLKDRMAALRRRKQDQTADPCTVGNASSEMQDDTNEDIENIVLHEDGNIDVDRLRPAEISGQSIVNFAHVFAELQKLSEHWKNVCRFVDLVITKTLRQGLKTKYFVVCHMCHFQGNFCNESPDDIILDVNTSAVCGTILTGTGHKQLQQLLAAMDVPCMNSKTYLEYAKHASKAFAIPVDVQIRAASEAEQKLAIERGDVINGIPHIPVVTDDSWMKRSYRSGYNSPSGTAMIIGYHTRKVLFLGVRNKYCVICARAANSVTTPKEHVCYKNWGVNQSSTSMESDIILEGFRCSIEMHGLMYNQYIGDGDSNVLKKLRDFPPYPDIDVQKIECVNHLLRNLSNKIQDAGNVGGRKYSKLKKIVKNSVMKIRNAVTKAAEHHRNSTVEWRDKIAGLMRDIDNIPNHVFGEHRNCASYICDGVPKKDETNLVPQLQAARIYEKLENIMQRIKQNAESLLYNYTSNSVESDNAIICKLIGGKRTHLGQRGSYQTRVQAAVVQCNSFTPMRNVPKESGLAIRKSRYSRKRGPDKDYGANAEEPDDDPETFEQLKSDHYRKLRSNQQNLEECERNTRKQHKDPHWHCQRKLLLTASNFGKVCSKKVIEKSHSAETTVQALNAVGGGLSFREAANLFKIPKSTLHSKMKNLSSVDAKKGPPSVLSKTEEDDIEKWIIYCAEQRFPVTKDIVCEQIISSTINLELQR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -