Lcal010622.1
Basic Information
- Insect
- Lasioglossum calceatum
- Gene Symbol
- -
- Assembly
- GCA_963966675.1
- Location
- OZ016542.1:4473281-4473916[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1e-09 1.5e-06 28.4 0.0 1 37 41 76 41 79 0.92 2 2 0.91 1.4e+03 -0.3 0.1 16 23 162 170 158 172 0.77
Sequence Information
- Coding Sequence
- ATGGCAGGTACAAAAAATCTCAAGAAGAAAAGTGTCAATACCAATCGTACGGTAAATAAGAAGTCTACTGTGTTAGTGAGTAAGGCAAATATCAAGAAGAAGAATAAGGGATTAAATTATACTCCTGAGAGTCTAAAGAATGCTATTAAAGCATTAGATACAGGTATTTCCCTCAGGAAAGCTGCTAATGCATACGGAGTTCCCGTAGTAACTTTAGCTGGGAGGAAAAACAATCCAGATGTTGTGAAAATGAAAACTGGACCAGCAACTGTTCTTACAGGAGCTGAAGAACGTGAGATTATTAACTGGATACTGTATGGAGCAGAAAGAGGGCATCCGGTTAATAAAACAGAGCTTCTAGATTGTATTCAAAAGTATATACAGTTATTGGAGGAAGAGACACCATTTATTGAAAACCGTCCAGGTCGTCACTGGTATGAAGGGTTTAGAAAACGTCATCAAAATTTGACAATTAGATCTGTACAGCACTTAAGTTTGAGTAGAGCTGCAGTAACAAGGCAAGATTTAAAAGAATGGTTTAACGAGcaagaaatgtatttaaatactaaAAATTTGCTGGATATTCCTCCAAATAGAATATTTAACTGTGACGAAACTAGAACGAGTTTTAACTAA
- Protein Sequence
- MAGTKNLKKKSVNTNRTVNKKSTVLVSKANIKKKNKGLNYTPESLKNAIKALDTGISLRKAANAYGVPVVTLAGRKNNPDVVKMKTGPATVLTGAEEREIINWILYGAERGHPVNKTELLDCIQKYIQLLEEETPFIENRPGRHWYEGFRKRHQNLTIRSVQHLSLSRAAVTRQDLKEWFNEQEMYLNTKNLLDIPPNRIFNCDETRTSFN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00860307;
- 90% Identity
- iTF_00860307;
- 80% Identity
- -