Basic Information

Insect: Lasioglossum albipes
Gene Symbol: -
Assembly: GCA_000346575.1
Location: KB641145.1:198170-199561[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 8.2e-06 0.00066 20.1 3.7 2 23 98 119 97 119 0.97

2 9 0.00023 0.018 15.6 1.0 1 23 121 144 121 144 0.95

3 9 0.0012 0.096 13.3 0.9 1 23 149 172 149 172 0.96

4 9 6.3e-05 0.005 17.4 1.6 1 23 178 201 178 201 0.95

5 9 0.0005 0.041 14.5 2.0 2 23 208 230 207 230 0.95

6 9 0.0032 0.26 12.0 0.4 1 23 235 257 235 257 0.96

7 9 0.0003 0.024 15.2 0.5 3 23 265 284 264 284 0.98

8 9 2.4e-06 0.00019 21.8 0.1 1 23 290 312 290 312 0.97

9 9 0.00041 0.033 14.8 0.4 1 23 318 340 318 340 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	8.2e-06	0.00066	20.1	3.7	2	23	98	119	97	119	0.97
2	9	0.00023	0.018	15.6	1.0	1	23	121	144	121	144	0.95
3	9	0.0012	0.096	13.3	0.9	1	23	149	172	149	172	0.96
4	9	6.3e-05	0.005	17.4	1.6	1	23	178	201	178	201	0.95
5	9	0.0005	0.041	14.5	2.0	2	23	208	230	207	230	0.95
6	9	0.0032	0.26	12.0	0.4	1	23	235	257	235	257	0.96
7	9	0.0003	0.024	15.2	0.5	3	23	265	284	264	284	0.98
8	9	2.4e-06	0.00019	21.8	0.1	1	23	290	312	290	312	0.97
9	9	0.00041	0.033	14.8	0.4	1	23	318	340	318	340	0.97

Sequence Information

Coding Sequence: ATGTCAGGATCGGTCGATCTTGAGACCGATAGCTACGTCGGGGGACCGCGAGAGTTCCCGAGAGAACGAAAAGTATTAGAACACCCAGATAAGATCCTGGACCCCCTGAGCGAAGAGTACAAGAGCTGCTCGGTCGCGAGCGTGGGATACACGGACTGGATCGACAAAGAGAAGTTCGAGACGGTGATGGTGTGCCGAGAGGAGTACAACGGGGACAAGGCGACGGAACCATTGTGTTCGGGGAGTGGTGTCGATCGGCGAACAAAGAAGAGAGCGGTAACGAGCCGGCTGGAGTGCGACCACTGTCGCCGCAAGTTCTCGAAGAAGAGCAACCTCGCGGAGCACTTGAAGAAGCACCGGCACAGTTGCGCGGACTGCCCGAAGACGTTCCGGCTTCGTCGATACCTGGCCTCGCACGTCGAGAAGATCCACAGACAACAGGTGTACGACTGCAGCGTGTGCGAGTACAAGAGCAACAACAAGGGCACGCTGAAGAACCACTACATACGGCTGCACACGAGCAACTACAACTTCGCTTGCGACGTCTGCGGGAAACAGTTCAAGATCAAGAAGGCCCTGAACCACCACGTCAAACAGAACCACAGCGACGCGCCGCCGATCGTATGCGACGTGTGCGGACACTTCAGCAAGAACCTCCACGCGCTGAAGGCCCACATGAAGTACAGACACTACAAGCCGGAGTTCATCTGCCGGATCTGCCGGAGAGGCATGACCACAAAGGAGAATCTCGAGCAGCATCTGACATGGCACGAGACCAGGGAGAAGGTGCTCTGCCCAACCTGTGGCAAAAGGTTTCGGGGCCGCGATCTCGACTCTCACATGAGGGTGCACACCGGGGTGAAACCGTTCCCCTGTCCGGTTTGCGGGAAATCGTTCCGCAGGCAGACCGCGCAGGAACAGCACGTCCTCATTCATACCGGGAAGAGGCCGTACATTTGCGATATCTGCGGACAGGCTTTCGCCCAGAAACCCGGATTGATTTGCCATAGGAAGAGACACCCCGGACCACTACCACCTCTACCCGTTGTGTCCATTAAGAACATAGTGACGGAGTTCACCAAGGAATATACTATGAAAAATACGATGATCAAAATCGAATAA
Protein Sequence: MSGSVDLETDSYVGGPREFPRERKVLEHPDKILDPLSEEYKSCSVASVGYTDWIDKEKFETVMVCREEYNGDKATEPLCSGSGVDRRTKKRAVTSRLECDHCRRKFSKKSNLAEHLKKHRHSCADCPKTFRLRRYLASHVEKIHRQQVYDCSVCEYKSNNKGTLKNHYIRLHTSNYNFACDVCGKQFKIKKALNHHVKQNHSDAPPIVCDVCGHFSKNLHALKAHMKYRHYKPEFICRICRRGMTTKENLEQHLTWHETREKVLCPTCGKRFRGRDLDSHMRVHTGVKPFPCPVCGKSFRRQTAQEQHVLIHTGKRPYICDICGQAFAQKPGLICHRKRHPGPLPPLPVVSIKNIVTEFTKEYTMKNTMIKIE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00360409;
90% Identity: iTF_00866192;
80% Identity: -