Basic Information

Insect: Lasioglossum albipes
Gene Symbol: -
Assembly: GCA_000346575.1
Location: KB640513.1:181446-185603[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0014 0.11 13.1 4.6 1 20 284 303 284 305 0.94

2 9 0.0056 0.45 11.2 0.7 1 23 352 375 352 375 0.92

3 9 0.00048 0.039 14.6 1.8 1 23 407 429 407 429 0.98

4 9 1.8e-05 0.0015 19.0 1.6 1 23 435 458 435 458 0.96

5 9 2.1e-06 0.00017 22.0 0.3 1 23 464 486 464 486 0.98

6 9 8.2e-08 6.6e-06 26.4 1.0 1 23 492 514 492 514 0.99

7 9 4e-06 0.00032 21.1 0.5 1 23 520 542 520 542 0.98

8 9 7.7e-06 0.00062 20.2 1.6 1 23 548 570 548 570 0.96

9 9 8.2e-06 0.00066 20.1 1.0 2 23 577 599 576 599 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0014	0.11	13.1	4.6	1	20	284	303	284	305	0.94
2	9	0.0056	0.45	11.2	0.7	1	23	352	375	352	375	0.92
3	9	0.00048	0.039	14.6	1.8	1	23	407	429	407	429	0.98
4	9	1.8e-05	0.0015	19.0	1.6	1	23	435	458	435	458	0.96
5	9	2.1e-06	0.00017	22.0	0.3	1	23	464	486	464	486	0.98
6	9	8.2e-08	6.6e-06	26.4	1.0	1	23	492	514	492	514	0.99
7	9	4e-06	0.00032	21.1	0.5	1	23	520	542	520	542	0.98
8	9	7.7e-06	0.00062	20.2	1.6	1	23	548	570	548	570	0.96
9	9	8.2e-06	0.00066	20.1	1.0	2	23	577	599	576	599	0.96

Sequence Information

Coding Sequence: ATGGAGCCTGAAAGCACTGTCATGCTGGAATCATGCGGAGAGGATTCGATCTTGATGCAAACCGTGAAAAACATGGTAACGGAGAATGTGCACGCAGAGTTAGAAAGTGAGGAAGAAGGGTTTTTTGTTGTGACCGACGTGGAAGACCCGCAACAGAATGTAATAGAAGTGAGCAACGAAGAGTCGGCTATAACCGAGAGCGAGGAACGAGTATCATGGTCGAATTTGTGCAGAGTCTGTGCCAATACCAATGATCATTTGATTCCGATATTCGAAGGAGAAGGTTTGCAGCACGATCTGTGTAGTAAAATACACAAATATTTACCTATACATATATCTGAAACAGATGTGCTTCCATTGCAGTTGTGTTATCACTGTGCTGCTACCTTGTTAGCATGGCACGAGCTTCTAGAAGGATGTTTAACAGCGGAAAGGAGGTTGTTAGAGATGCAGGAAACTCTGCAGGAGAAGCAGAGTTCAGAAGGCCTAGAAGTATCGGTAGACACTAGTATGTCTAATATAACAGAATCTTTGCATCAAGAGCAGGAAACTGTAAAGGGCGAAGATTGTGGGGAAGTGGCTGATGATGATATGAACAGGTTTGGTCTACCTCGGAAGAAATCCCTCGCGGCATACTGCTCGTGGCATATGACAGCGACGCGCTCGAATAATATTATTCAAACCAATAACAAATGTACAGCTCCGCAGAGACTCGTCGAGGCTAGACGCGCGACAAAACAAACTCGCGAAGAGGAGGAGAGTACAGACTCGTCCAGCGATTCCGATAGTTCGGACGAACCTAACGCGACACCCATGCTTCCTTCCAAAGTCGTAGAACACAACGGTCCTCACAGGTGCACCACATGTCAGAGAAGTTTCAAAAGAGAATGTCACTTGGCCCGACACGCGGCCAAATGTTCGAACAGCGTAGACAGTATCGAAGATCGCGAAAGTATATCAAAGGACTCCGAGAACGAGGTCGAGGCCAAGATGAACGACGAAAGAGAAGACTGGACATCGTACAAGAAGTGCAAGAGGAAGCGTCACGAGACGCACCCGTGCATGTACTGCGACTACGTCTCCAAGAAGAAGAAGCTGCTGGAGGTGCACTTGGCGGAGTCGCATTCGGAATTCGTCGGCAAGAAAAACCGGAAACTGAGATGCGTTGACAGAGAGCTGGTGACACGTGCCAGAATGGAAGTCGACGGCAAAGTGTACTACCATTGCGACCAATGCGGGAAAAATCTATACTCGCCGTACACGTTTTTCTGGCACGTGCGAATACACACTGGCGAACGGTCCTACACGTGCCACCTGTGCGGCAAACAGTTCCGAGTAAACCAGGGTCTGGCTAGACATCTCAAGGACACCCACGCTGGGATAAAAAACTTCCCCTGTGACATCTGCGGCCGGATGTTCACCACGAAACGCAACGCGGAGGATCACAGACGTATACACACCGGCGAACGGCCGTACGTCTGCAACGTCTGCGGGAAATCGTTCAAACAAAAGGCCTCGCTGTTCGTGCACAATCGGACGCACACGGATGTGTTCCCGTTCAAGTGCAACTACTGCGGACAAAGCTTTCGTACGAGGCCACCACTTGCGGTTCACATAACGAAACACACCGGCGAGAAACCGCACGCGTGCGACATTTGCGGCCGACGATTCCGCATCAAGTACGAGCTCAAGCGACACCGGTTGATACACTTCGACGAGAAACCGTGGCAGTGCAACGAGTGCGACCTCTCGTTCCGACAGAAACGATACTTGGTTAATCATAAGAGGATTAATCACTGCTCGAGTTGA
Protein Sequence: MEPESTVMLESCGEDSILMQTVKNMVTENVHAELESEEEGFFVVTDVEDPQQNVIEVSNEESAITESEERVSWSNLCRVCANTNDHLIPIFEGEGLQHDLCSKIHKYLPIHISETDVLPLQLCYHCAATLLAWHELLEGCLTAERRLLEMQETLQEKQSSEGLEVSVDTSMSNITESLHQEQETVKGEDCGEVADDDMNRFGLPRKKSLAAYCSWHMTATRSNNIIQTNNKCTAPQRLVEARRATKQTREEEESTDSSSDSDSSDEPNATPMLPSKVVEHNGPHRCTTCQRSFKRECHLARHAAKCSNSVDSIEDRESISKDSENEVEAKMNDEREDWTSYKKCKRKRHETHPCMYCDYVSKKKKLLEVHLAESHSEFVGKKNRKLRCVDRELVTRARMEVDGKVYYHCDQCGKNLYSPYTFFWHVRIHTGERSYTCHLCGKQFRVNQGLARHLKDTHAGIKNFPCDICGRMFTTKRNAEDHRRIHTGERPYVCNVCGKSFKQKASLFVHNRTHTDVFPFKCNYCGQSFRTRPPLAVHITKHTGEKPHACDICGRRFRIKYELKRHRLIHFDEKPWQCNECDLSFRQKRYLVNHKRINHCSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01071165; iTF_00966169;
90% Identity: -
80% Identity: -