Lalb002735.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lasioglossum albipes
Gene Symbol
-
Assembly
GCA_000346575.1
Location
KB641145.1:246870-250706[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.00026 0.021 15.4 2.7 2 23 158 180 157 180 0.97
2 14 0.057 4.6 8.1 7.5 1 23 184 205 184 205 0.98
3 14 0.00013 0.01 16.4 0.3 2 23 212 234 211 234 0.96
4 14 7.4e-05 0.0059 17.1 1.4 1 23 241 264 241 264 0.95
5 14 1.8e-05 0.0015 19.1 1.4 3 23 271 291 270 291 0.96
6 14 7.8e-07 6.3e-05 23.4 3.0 1 23 297 319 297 319 0.99
7 14 0.00015 0.012 16.2 1.5 2 23 575 597 574 597 0.96
8 14 5.2e-05 0.0041 17.6 3.0 1 23 601 623 601 623 0.98
9 14 0.00073 0.059 14.0 3.9 1 23 629 652 629 652 0.97
10 14 0.00023 0.019 15.6 0.5 1 23 685 708 685 708 0.97
11 14 0.0065 0.52 11.0 4.9 2 21 719 738 718 739 0.93
12 14 9.3e-06 0.00075 20.0 4.0 1 23 743 765 743 765 0.96
13 14 4.4e-06 0.00035 21.0 2.3 1 23 771 793 771 793 0.98
14 14 8.3e-06 0.00067 20.1 1.4 1 23 799 821 799 821 0.98

Sequence Information

Coding Sequence
ATGTCACCGGATGCTACTCAGAATCCAGCACAACCACATTTTATAGTATGTTCCGGGGTTCCAGACATTGATCAGGAATATCGGTCCCAGTCCCCAATGCACTGTGAAAGCAACAACGCTAGTGGCCCCGAATTTCCTCGGCTCGACGGCAACGACGCGGATTGGTGCGGCAAACGTGAGATTAACGATGATTTGGATCTAGATGAAACGCCGCATTATGGTTCATACTCAGCATACGACGAGCATTCATCGAAGGTGGACACCAACGATCCCTTGCTGAACGAAATCAACGACGATTCCACAAAAGAACAGCCCCGCGTACAGTCGAGGTCGTTTCTGGTGCCTGTGAGGGACCCAGTGACGAAACAGATTACACACGAAGTGGTGCCTATCGAAATCATTGACGAGACAGGATCGAACATAATCAAAAGCGTCCTGGTTCCGGTCAAAGATCCAAACGGAGTTCAAATCAAATGCCAGTTTTGCCAGCAAGTGTGCGACACGCGAGCATTGTTGACCAGACACATTCGTACATTCCACGAGTTGTCGCACCGATGTGTCCATTGTCACCAGACCTATTCGAAGGCAGACTACAAGATACACCTGAGGACACACAAGGCAGATACGTATGTGGAATGTCCGGTCTGTCAGCAGAGGTATAAGCGTATGTACGGGCTCAGGAGGCACCAGATCCGCGTGCACAGCAACATAGAGCCGAAGTTTATCTGCGACCACTGCGACAAACGTTTCAAGCTGAAGACTGACTTGGCCCTGCACATCGACAGCACTCACAGGACCGCCACTCGCGCCTGCAAATTCTGCGGCAAGTGTTTTACTACCCAGAACGCGCTCACTGTCCACGAGCTGATCCACATTGGCGTGAGACCGTACACATGTGACATCTGCGGAGAAACCTTTACTCAACGGAGCTGCTTGAGGGTGCATCGCAACAGACACCCTGGAAATCACCCACCTCCGCCTCGCGTCAATTTGGTTAATTTTCTGAAACGGATTTCGACGATCGCGGAAACCATACAGCACCTAGCGCAACCGCTTTTTGTAGAATGTAACGGGCCGCCTCTTCTGGACCAAGATCAATTGTCGATTAATATGAAGACATCCCCGATCACTGACTTCAAGGAAGAGCAGTGCATGCTGAGCGACACTGAATGCGAACACTCCATGACCGATGACGGACTGTACCTGGGTGACTCGAGTTATCTTTCTTTTCCCAGTGATGTCTCGCAGACCGAGGTCAGCGACGATTCTGTGAAATACGATGCAAGCAGCAAGCCAATATCGTCGTTACTCGTGCCGGTCAGGGACCCGGAAACGAAGATAATTAAGAACGTGTTAGTGCCGCCGGAAGTGCAGGACGAGTCTGGAATGAACCTAATCAAGAGCATCCTGATACCGGTCCAGGAGCCGGATGGAATGGTGACTTATGTGATCAAGAGCGTCATGGTCCCGATCAAACCCAAGAAACAAGTGAAGCAGCCTGTCCCTGTCCCTGTCCCTGTCCCTGTCCCCGTCCCCGTCAAAGAGACACTGCCTAAGACAGATAAAATCGAAAAAAAAGAAAAGAAAAAGAAGACGAAGTTGAGCAAAAGGACTGAGGGCGATGAACAAAAGGAAAAGGATAACAAAACCGAAGAAGCAGAGCAAGCAGAGTTTGTGGAGCCTAACGAAGAGGTTGACTTGATACTGGCAGACCTCCGAACCACCTGTCCGTTCTGTCAGAAGAGTTTCAAGAGCGTGCAGCAGGTGAACAAGCACGTTCGTAGGGAACATCAGCAACCATTCCGCTGCAAAAAGTGTCATTATAGTTATACAAAGGTGGAGGAGCTCGAGAAGCACATGGAGGTCCACGAGAAGGACACCTACCACAAGTGTCCCTTCTGTCACTTAAAGTATAAGAGAATGTCTGGATTGAGAGCTCATCAGATCCGCGAACACAGCAACGTGGATCCAGTCTGCCTCCGCGATCGCGTCAAGGAAGGCGTTATCAACGATCCAGAGGACTCGCCGACAGGAAGCGCGGGAACGAGGATTTACGTCTGCCAGGTCTGCGGGAACCACTATGATCAGAAATCGTACTTGATCGCCCACAACCGCATCGCTCATGGCTATCAAAGGAACGAGGTTAGGCGCTTGAAGTGCCGTGTCTGCAAAAAGAAATTCACCTTTCAACACAGCCTCGAGAGTCATCTCTGCAACGAGCCTAGCTTCCTCTGCTCCCATTGCGGCAAGAAATTCAGCACCAATTACACTATGCTGCTACACATGAGAAGCCACACTGGCGAACGACCGCATCAGTGCACAGTTTGCCAGAAATCGTTCTCCAGGGCAGTGTCGCTGAGGATCCACAAACTCACTCACACGGGCGAGAGGCCGTATATCTGTGATCTTTGTGGACGAAGTTTCACTCAGAGGACCACCATGATGATTCATCGCAGGAAACACCCCGGAAATCATCCTCCGCCGCCTCCATTGTTCCTCAGTAGGCGTATGAGCAACCTGAACGAAGAAAAAGAGTGA
Protein Sequence
MSPDATQNPAQPHFIVCSGVPDIDQEYRSQSPMHCESNNASGPEFPRLDGNDADWCGKREINDDLDLDETPHYGSYSAYDEHSSKVDTNDPLLNEINDDSTKEQPRVQSRSFLVPVRDPVTKQITHEVVPIEIIDETGSNIIKSVLVPVKDPNGVQIKCQFCQQVCDTRALLTRHIRTFHELSHRCVHCHQTYSKADYKIHLRTHKADTYVECPVCQQRYKRMYGLRRHQIRVHSNIEPKFICDHCDKRFKLKTDLALHIDSTHRTATRACKFCGKCFTTQNALTVHELIHIGVRPYTCDICGETFTQRSCLRVHRNRHPGNHPPPPRVNLVNFLKRISTIAETIQHLAQPLFVECNGPPLLDQDQLSINMKTSPITDFKEEQCMLSDTECEHSMTDDGLYLGDSSYLSFPSDVSQTEVSDDSVKYDASSKPISSLLVPVRDPETKIIKNVLVPPEVQDESGMNLIKSILIPVQEPDGMVTYVIKSVMVPIKPKKQVKQPVPVPVPVPVPVPVKETLPKTDKIEKKEKKKKTKLSKRTEGDEQKEKDNKTEEAEQAEFVEPNEEVDLILADLRTTCPFCQKSFKSVQQVNKHVRREHQQPFRCKKCHYSYTKVEELEKHMEVHEKDTYHKCPFCHLKYKRMSGLRAHQIREHSNVDPVCLRDRVKEGVINDPEDSPTGSAGTRIYVCQVCGNHYDQKSYLIAHNRIAHGYQRNEVRRLKCRVCKKKFTFQHSLESHLCNEPSFLCSHCGKKFSTNYTMLLHMRSHTGERPHQCTVCQKSFSRAVSLRIHKLTHTGERPYICDLCGRSFTQRTTMMIHRRKHPGNHPPPPPLFLSRRMSNLNEEKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-