Lalb008280.1
Basic Information
- Insect
- Lasioglossum albipes
- Gene Symbol
- -
- Assembly
- GCA_000346575.1
- Location
- KB640913.1:1504-3569[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-10 1.5e-07 31.2 0.0 1 38 41 77 41 82 0.96 2 2 3.5 4.3e+03 -2.3 0.1 16 23 162 170 158 171 0.77
Sequence Information
- Coding Sequence
- ATGGCAGGCACAAAAAATCTCAGGAAAAAAAGTGCCAATACTAATTGTAACATAAATAGGAAGTCTTCGGTATTAGTCAGTAAGGCAAATGTCAAGAAGAAAAATAAGGGATTAAATTATACTCCTGAGAGTATACAGAATGCTATTAAAGCATTAGACACAGGAATTTCCCTCAGGAAAGCTGCTAATGCGTACGGAGTTCCCGTAGCAACCTTAGCTAGGAGGAAAAACAATCCAGAGGTTGTAAAAATGAAAACTGGACCAGCAAGTGTTCTCACGGAAACTGAAGAACTTGAAATTGTTAATTGGATACTGTATCGAGCCGAAAGAGGGTATCCTGTTAATAAAACAGAACTACTAGATTGTATTCAGAAGTATATACAATCACTGAAAAAAGAAACTCCATTTATTGAAAACAGTCCAGGCCGTCACTGGTATGAAGGATTTAGGAAACGCCATCCGAATTTAACAATAAGATCTGTGCAGCACCTAAGTTTAAGCAGAGCTGCTGTAACAAGCCAAAATTTAAAAGACTGGTTTAATGAGCAGGAGATGTATTTAAATACAAAAAATTTGATAGATATTCCTCCAAACCGAATATTCAACTGTGACGAAACAAGTATAGCACTATGTCCTGACTCAGACAAAGTTTTAACTAAAAAAGGGTGTCGCTCAACGTACAAAATTACAGATACAGGGAAAGAAAATCTGACTGTCCTTTTCATGTATAGTGCAGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATCCCATATAACAATACCAGTAGTATCCTTCTGCCGAGACAGGAAAATTGAACTTATAGGACTGTATCCAAATTCCACTCATATACTACAACCTCTGGACATAGCTTTTTTCCACCCTTTTAAGCAAACATGGAAACGAACAGTACCAAAATGGAAAGTGCAAAATAATAGAATACAAATTAAAAAAGGAGACTTTCCACTTGTGTTAAAAATGGCACTAGATAGTTTAGAAGATGAAAAAGACATTATACAAAGTGGATTCAAAGCATCTGGATTAGTGCCGTTTAATCCTAATGCTGTCGATTATGACATTTTAAACAAACCAAAAAGAAGTATTTCTTCTACTCATACAGAAGGAAATGTAAAAGAGCATCAAGTAACATCAAATAATGTGATGGAAGATAAAAACCAGCATTTGCAAACATTTGAGAAAAACATATCTCCTGAACAATTATTAGAATTTAAAAATTCAAATGGACAGTGGGCAGGCAATATTGAGAAGAAAGGACTTTTTGAATACTGGCTTCAAATTGGAGGAACATCTTTTGATCATAGTTTAAGAACGAAACCTAACATCAGGAGTGTGGAAAATTTAATTGATTTTAGAGTTAAAATAGTGAGTCAAGACACTACTAATGAAAATAAGGAGGACAATTCAATTTTACCTCTAGAGAATATAGGTTTTGACAATGATCTACAACATATCATACCAGAAACATCCGTTGTAAACAACGAACCAGTGTTAGAGATAATACATGTACCAGAAAGTGTACATGTACAAGAAAATGTTCAATTACAATTTGTAGATGAGACTCTATTAAATGATACTACACTGGATGGTGCAATCATATGTGATATACCAATGAATGACATTAACTTATCACCTGAAAAGAGCAAATCTTTAACTAGTCAATCAACGGATAAGATCAATGTAGACCAGGAGAATACTGAGCTGATATATAATCAAG
- Protein Sequence
- MAGTKNLRKKSANTNCNINRKSSVLVSKANVKKKNKGLNYTPESIQNAIKALDTGISLRKAANAYGVPVATLARRKNNPEVVKMKTGPASVLTETEELEIVNWILYRAERGYPVNKTELLDCIQKYIQSLKKETPFIENSPGRHWYEGFRKRHPNLTIRSVQHLSLSRAAVTSQNLKDWFNEQEMYLNTKNLIDIPPNRIFNCDETSIALCPDSDKVLTKKGCRSTYKITDTGKENLTVLFMYSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSHITIPVVSFCRDRKIELIGLYPNSTHILQPLDIAFFHPFKQTWKRTVPKWKVQNNRIQIKKGDFPLVLKMALDSLEDEKDIIQSGFKASGLVPFNPNAVDYDILNKPKRSISSTHTEGNVKEHQVTSNNVMEDKNQHLQTFEKNISPEQLLEFKNSNGQWAGNIEKKGLFEYWLQIGGTSFDHSLRTKPNIRSVENLIDFRVKIVSQDTTNENKEDNSILPLENIGFDNDLQHIIPETSVVNNEPVLEIIHVPESVHVQENVQLQFVDETLLNDTTLDGAIICDIPMNDINLSPEKSKSLTSQSTDKINVDQENTELIYNQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -