Lalb012323.1
Basic Information
- Insect
- Lasioglossum albipes
- Gene Symbol
- -
- Assembly
- GCA_000346575.1
- Location
- KB639413.1:336309-337001[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.1e-11 1e-07 31.7 0.0 1 38 41 77 41 79 0.96 2 2 1.5 1.8e+03 -1.1 0.1 17 23 164 170 158 172 0.77
Sequence Information
- Coding Sequence
- ATGGCAGGCACAAAAAATCTCAGGAAAAAAAGTGCCAATACTAATTGTAACATAAATAGGAAGTCTTCGGTATTAGTCAGTAAGGCAAATATCAAGAAGGAAAATAAGAGATTAAATTATACTCCTGAGAGTATAAAGAATGCCATTAAAGCATTAGACACAGGAATTTCCCTCAGGAAAGCTGCTAATGCATACGGAGTTCCCGTAGCAACTTTAGCTAGGAGGAAAAACAATCCAGATGTTGTGAAAATGAAAACTGGACCAGCAACTGTTCTTACAGAAGCTGAAGAATGTGAGATTGTTAACTGGATACTGTATCGAGCAGAAAGAGGGTATCCGGTTAATAAAACAGAGCTTCTAGATTGTATTCAAAAGTATATACAGTCATTGAAGAAAGAGACACCATTTATTGAAAACCATCCAGGTCGTCACTGGTATGAAGGGTTTAGAAAACGTCATCAAAATTTAACAATTAGATCTGTACAACACATAAGTTTGAGTAGAGCTGCAGTAACAAGGCAAGATTTAAAAGAATGGTTTAGCGAGCAAGAAATGTATTTAAATACTAAAAATTTGCTGGATATTCCTCCAAATAGAATATTTAACTGTGACGAAACTAGTGTATCATTATGTCCTGACTCTGATAAAGTTTTAACTAAAAACAATACAACATTTTTCCACGATAGACAATAG
- Protein Sequence
- MAGTKNLRKKSANTNCNINRKSSVLVSKANIKKENKRLNYTPESIKNAIKALDTGISLRKAANAYGVPVATLARRKNNPDVVKMKTGPATVLTEAEECEIVNWILYRAERGYPVNKTELLDCIQKYIQSLKKETPFIENHPGRHWYEGFRKRHQNLTIRSVQHISLSRAAVTRQDLKEWFSEQEMYLNTKNLLDIPPNRIFNCDETSVSLCPDSDKVLTKNNTTFFHDRQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00860307;
- 90% Identity
- iTF_00860307;
- 80% Identity
- -