Lcon026570.1
Basic Information
- Insect
- Lapara coniferarum
- Gene Symbol
- -
- Assembly
- GCA_949316025.1
- Location
- OX438932.1:1542094-1545553[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.011 0.94 10.9 3.0 1 23 249 272 249 272 0.97 2 17 3.3e-05 0.0027 18.9 3.4 1 23 277 299 277 299 0.99 3 17 1.7 1.5e+02 4.0 2.2 2 23 303 324 303 324 0.95 4 17 0.7 59 5.3 0.2 1 23 329 352 329 352 0.92 5 17 0.014 1.2 10.7 1.1 3 23 414 435 413 435 0.96 6 17 6.4e-05 0.0054 18.0 1.5 1 23 441 464 441 464 0.94 7 17 0.17 15 7.2 0.3 3 21 469 487 468 488 0.93 8 17 0.61 51 5.5 0.1 1 20 496 515 496 519 0.85 9 17 0.19 16 7.1 0.1 1 23 524 547 524 547 0.92 10 17 0.026 2.2 9.8 0.2 2 23 560 581 559 581 0.93 11 17 0.011 0.93 11.0 2.5 1 23 587 609 587 609 0.98 12 17 0.00023 0.02 16.2 2.8 1 23 644 666 644 666 0.97 13 17 0.026 2.2 9.8 0.1 3 23 671 690 670 690 0.97 14 17 0.044 3.7 9.1 2.5 3 23 704 725 702 725 0.96 15 17 0.0014 0.12 13.8 4.3 1 23 731 753 731 753 0.98 16 17 0.00015 0.013 16.8 4.5 2 23 760 781 759 781 0.96 17 17 0.1 8.6 7.9 1.7 1 23 787 810 787 810 0.96
Sequence Information
- Coding Sequence
- ATGGAGGACACTATAGAAATTCATGAATGTCATGAAATGAAAAACCCATCCTCGACAGAATCGATCCAAGTAGAATGGTTGAAGCAAAAGTTAAAATGCCTGTGGGATTCTACTCCATTCTGCGGGATGTGCTTGGATAACACAAGGAGCCTTAATGCCCTGGACCATGAGTTTGTTATCGGAAGGCAGAAAGAGTCACAATCACTTCTGgacattttaaattatgtatttaatgaAGATattgaaaatattatgtctAGCACTCAGTTATGTGATAACTGTTCAGAAAAAACAATACAATCGTATTTATTTATACGGAACACTAAGTTACTATCGAAAATCATCAATAACTGTGTCTCGGATatatatagcaaagctgtggaTGTTGGGGAACAAATCCTGGATAACTTCATGTACGATAATGCTAATGTCATGATTGTTTTAGAGAATGACAAGGAGATATTTGGTGAGGTTGAAAATCTTACTGCGATTACAGAAATAATACCAACAGACAGACCGATTATAGCAAAAGCTGCCTGTCCACAACATGAGAATAAACAGGATCCTAAACCCCAAAAGACTGGACAGTTAGTAATAATAAGTAAGGAAGAAATTAAGATTAACGAAGAGTTGCCTGAACCAATAACGTCAGAAGGAACTCCAAACATTACATTGGAGAAAGGGAAGCTTGTTATAAAACCAATAAAAACTCTCTTGAGTCGATCTGTGCCAACATACAGCACTTATAGATGTAATAATTGTCCAGACATTTTCACAACTCATAAATCATTGAGGGAACATGAGAAATCAAAGCACAAATTCCATGTCTTTCAATGTAGGATGTGTGAAAAGTCATATAACACACAGCAATCATTAAATAATCATTATAAAACCCATTCGAAGGCTAGATGCAAAATTTGCCGCATGATATTGCACCAAGAAGAACTGTTCTCACATTTAAGGGAATTTCACTCTAACATAGTTTATCCATGCAAATTTTGTGAACTAGTTTACTATGCTCAAGAAGCTTTAGACACACATTTTAAAGCGAATCATTTAGTTAATGATACAACTGCACAATCACAATGCATTATGTGTCTAAAAGAAATAAGTGAAGATCAATTAAAAATCCATAAATGCAAGTTTAGTTGCTCAGATTGCTTTGTAATGCCATgcattcattataattatttggtaTCCTACAGACAGCAAGTGCTAAACCATTCAGCTAAAGTTGCATGCACAGATTGTGACTATGTAACTCATCGGAAGGAATATTTCATAACCCATGTGAATAGAGAGCATTTGGATTACCATCCGTTCACATGCAATGACTGTGGAATGCAATTTTACACAAAAATGAGTTTAAAAACTCACATAGACCAATATCATATCGACAATATTTGTGCATACTGTGACACAGAATTCAAGAAACGCAATGTTCTGGTCGAACatagaaaaaaatgtaaatcaATAATCAGGACATTTCCTTGTGATAAATGTCCAGCTTCGTTTGAGTTGGAAGAAGAAATTATCAAACATGAATTCCTTAGACATAGTGATGGTGGATTTGCATGTAAATTATGCAACAGAAGATTTCTAGAAGAGGTACAGTTAGAAGAACACCAAGTCATGGCACACAGTAGTGTCCAATGCAAGAAGAGACGGAAAAATATTGAATGCACCTTGTGTGAAATAAAATTCAACAACATAAAAGAATTAAAACAACATGAGGATTTGCATGGACCGAACACAACATATCCTTGTAAAACATGTTTGAAGAATTTCCAGAGTCTGAAAAAGTTATACATTCACCAACAAAGGCACTATGATAGGATACAATGTGCTGGGTGCAAGAAGAGAATCATAACCGGTTTCTACCCACAACACGCTGTGCGTTGCATGTATGTAAGAGAAGGCTCCATGCAACACATTTGTGAAGTCTGTGGAAAGTCTTTCCACTTAGAATCATTACTGCGCTTACATCAGAAAAGTCACGAAAAAGTGGCTTGTTCAGAATGCGGCAAACTTGTGAAAGCATCTAATCTTGAGATCCATCTAAGAGGCCACAGTAATATTAAAGGCACCCGAAGCATACCCAAGATCGCGTGTGATCTATGTGGTCATATGGTGCGGAAGAAATGTGATTTAGACACGCACATGAACAGATATCACTTGAAAGTGAAGCCATATTCGTGTCATATTTGCAGCAAACGTTTTTGTGGAAAAGTAAGGCTCACCGAACACTTGGCAACGCATACATCGGACAATGAATGCTTCTGTTCAATTTGTGGGAAAAAGTTTGCCAATAAAGTGTGTCTGAAAATGCATGTCCGTATACACACTGGAGAATGCCCCTACACATGTGACTTGTGCGGGGATAAATTTAGATCCTCAAGTATTATGAAAACGCACAGACTCAAAAAACATTTAGAGAAAAGCATTGCTTGTCCGGCCTGTGACAGTATGTTCCACATAGTTCGAGAGATGAGACATCACTTCAAAAATGTGCACTGGAAGGACAAAGATAGGCCGTTTAACTACAAAGAAGCAGTGTCGCCAGAGTATTATCATTTGTTTGAGGATGGCAGGCTTCCAAAGGTTGACCCCGAGGCAATGATAAGTTCCTAG
- Protein Sequence
- MEDTIEIHECHEMKNPSSTESIQVEWLKQKLKCLWDSTPFCGMCLDNTRSLNALDHEFVIGRQKESQSLLDILNYVFNEDIENIMSSTQLCDNCSEKTIQSYLFIRNTKLLSKIINNCVSDIYSKAVDVGEQILDNFMYDNANVMIVLENDKEIFGEVENLTAITEIIPTDRPIIAKAACPQHENKQDPKPQKTGQLVIISKEEIKINEELPEPITSEGTPNITLEKGKLVIKPIKTLLSRSVPTYSTYRCNNCPDIFTTHKSLREHEKSKHKFHVFQCRMCEKSYNTQQSLNNHYKTHSKARCKICRMILHQEELFSHLREFHSNIVYPCKFCELVYYAQEALDTHFKANHLVNDTTAQSQCIMCLKEISEDQLKIHKCKFSCSDCFVMPCIHYNYLVSYRQQVLNHSAKVACTDCDYVTHRKEYFITHVNREHLDYHPFTCNDCGMQFYTKMSLKTHIDQYHIDNICAYCDTEFKKRNVLVEHRKKCKSIIRTFPCDKCPASFELEEEIIKHEFLRHSDGGFACKLCNRRFLEEVQLEEHQVMAHSSVQCKKRRKNIECTLCEIKFNNIKELKQHEDLHGPNTTYPCKTCLKNFQSLKKLYIHQQRHYDRIQCAGCKKRIITGFYPQHAVRCMYVREGSMQHICEVCGKSFHLESLLRLHQKSHEKVACSECGKLVKASNLEIHLRGHSNIKGTRSIPKIACDLCGHMVRKKCDLDTHMNRYHLKVKPYSCHICSKRFCGKVRLTEHLATHTSDNECFCSICGKKFANKVCLKMHVRIHTGECPYTCDLCGDKFRSSSIMKTHRLKKHLEKSIACPACDSMFHIVREMRHHFKNVHWKDKDRPFNYKEAVSPEYYHLFEDGRLPKVDPEAMISS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01359198;
- 90% Identity
- iTF_01359198;
- 80% Identity
- -