Lcon022093.1
Basic Information
- Insect
- Lapara coniferarum
- Gene Symbol
- -
- Assembly
- GCA_949316025.1
- Location
- OX438929.1:24302744-24325246[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.92 77 4.9 0.2 1 23 268 291 268 291 0.94 2 9 0.012 1 10.8 3.0 1 23 401 424 401 424 0.96 3 9 4.6e-05 0.0039 18.5 3.3 2 23 429 450 428 450 0.97 4 9 0.018 1.5 10.3 1.0 2 23 458 478 458 478 0.97 5 9 3.1e-05 0.0026 19.0 1.2 1 21 484 504 484 509 0.94 6 9 0.0019 0.16 13.3 0.4 1 23 517 540 517 540 0.94 7 9 7.8e-05 0.0066 17.7 0.2 1 23 546 569 546 569 0.97 8 9 2.2e-05 0.0018 19.5 0.6 1 23 579 601 579 601 0.94 9 9 5.4e-05 0.0045 18.2 1.4 2 23 608 630 607 630 0.96
Sequence Information
- Coding Sequence
- ATGGAACAGGGCGTTGATAATAATTACACGACGGTGTGCTGCACTTGTCTAAGCGGCGATCGCAATCTATTTTCATTAACTGATTCAACGCATGTTCTTCAAATATTTCGTTTACTTATGCACGACTACACGGGGGACAGGTTAGGCGAAACCATACCGGAACTGGATCAGCTGGTGTGCTGGGAGTGCCTGGCGGTGATGAAGAGGTTCGTCAAGTTCAAATGGCAGGTGCACAACGCGCAGGACCATCTGAGGGTGCTGGCGCTGAGCAGGACGCAGGAGATGGTAGACCACTCGTACATGTCCCAATCCCTCTCCACACTAGAAGTCGACACTAAAAACGACTACGACAAGATATTTTTCGACTTTTCGTTCGGCGGCGATGACGGTCAACAATACATAGCAATAGCGACGTCGGACAGCGTTAAAAGCGAGCAATACGACGTCATACAGGCCGTGAGGGATAACATTAACTTGGATATTGACGGACATATTCTTGAAGTACCGGAAATAGTCCTGGAGAATCCCGTCACCGGAATGATGTCTCACATAGTGGTCGGGACGGATACTTTAGTGTCCAACACTGACACCTACGGTACAACTATTAAAGGGGAGGTGCCACATCTTACCATTGGACCAATTCCAGAAAAAAAGGAGAAAGTTGTTATTTCAAAACCGATATGTAAACTAGAAAAGGTGGAGTTAAAAACGCCAGGATACGTAATGGAGTACATGAACGAGACTGACATAATGGCTTGTAGAGAAGAGTTAAGACACAAAATACAATACGCAGGCTCAGTTTACAAATGCGAACTGTGTATTATCGGGTTTTATACACAACAACAAGTCGAGGATCATTTCCTGTCTGCGCATAGAGCGaaaCCCGGGCATATAGCGTGTAAAATATGCTATGTGTATGTGGAGGAAGCTAAAATGAGATCCCATTTAGACATGCACCACTATAGGTACGTATGCAAACTGTGCGGTTACGTGGAGTACATAGTTAAGTTGATGCAATTGCACGTGAGGAGTCATCTAGCCAAGCAGGTGCCGAGCAATGTCATCAAGATAGGAGACGCCGGCACCAACACCAGTACTAAGTCTAGAAAGAGAAAAGATAAGGAAAAAGACAAGGAAATCAAAGGCTCTCCAAAACCAGGCGATTTGAGGAAACTGCTCTCAAAAACGACCATTGAGGGATACCAGTGTTTGGAATGCGACATGTTTTTCAAgaaTTCCCGAGCGAGGAAAAACCACGTGGCGCGCTGTCACAGAGAAGGCCTGCAGTGTGACCATTGTAAAAAACGATTCGTGAACCGAACAACACTTGTCACTCATCTGAGGCTCCACGAAGGCCCTCTACCGCGTGAGGAGTGCCCAGTCTGTCACAAGATGGTCCGCGTCATACAACTCAAGTACCACATCAGGCGGCATCAGAACAGGAGTCGGTACGAGTGTTCCGATTGTAATAAGGTGTTCTCTCACCTGGCGACTTATCAGGCGCATCTCAAGTACTCCAGGGCGCATGCGTCGGATCAGGTGTTTAAATTTCCATGTCCAATGTGCAATAAAGGCTATCCGACCAAACAGGCGATGCAGGATCACTTCAACTATCAGCATTTAGGGAAGACTTCGCACAAATGTCCAATCTGTGAAAAGCCCATAGCGTCGCGGTCAAACGTAGAAAAACACATTATGAGAGTCCACGGCGAGAAAAAGGAGAAACCTAGGAACCACGTGTGTCAGATGTGCGGCAAGGGATTCACTGACAAGAAAGCACTCACCCAACACGAAGTGATCCACTCCAGGGATCGTCCGCTCTCCTGCGACATTTGTCAGCAAACGTTCAAGCAAAAAGCGTCTTTATATACTCACAGGAAGCGTGTACACAAAGTGTTTCCTACGAAAAAAGTCGTGCAATACATGGATAGTGGTACTGAGACGCAGTAG
- Protein Sequence
- MEQGVDNNYTTVCCTCLSGDRNLFSLTDSTHVLQIFRLLMHDYTGDRLGETIPELDQLVCWECLAVMKRFVKFKWQVHNAQDHLRVLALSRTQEMVDHSYMSQSLSTLEVDTKNDYDKIFFDFSFGGDDGQQYIAIATSDSVKSEQYDVIQAVRDNINLDIDGHILEVPEIVLENPVTGMMSHIVVGTDTLVSNTDTYGTTIKGEVPHLTIGPIPEKKEKVVISKPICKLEKVELKTPGYVMEYMNETDIMACREELRHKIQYAGSVYKCELCIIGFYTQQQVEDHFLSAHRAKPGHIACKICYVYVEEAKMRSHLDMHHYRYVCKLCGYVEYIVKLMQLHVRSHLAKQVPSNVIKIGDAGTNTSTKSRKRKDKEKDKEIKGSPKPGDLRKLLSKTTIEGYQCLECDMFFKNSRARKNHVARCHREGLQCDHCKKRFVNRTTLVTHLRLHEGPLPREECPVCHKMVRVIQLKYHIRRHQNRSRYECSDCNKVFSHLATYQAHLKYSRAHASDQVFKFPCPMCNKGYPTKQAMQDHFNYQHLGKTSHKCPICEKPIASRSNVEKHIMRVHGEKKEKPRNHVCQMCGKGFTDKKALTQHEVIHSRDRPLSCDICQQTFKQKASLYTHRKRVHKVFPTKKVVQYMDSGTETQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00858913;
- 90% Identity
- -
- 80% Identity
- -