Lcon022223.1
Basic Information
- Insect
- Lapara coniferarum
- Gene Symbol
- -
- Assembly
- GCA_949316025.1
- Location
- OX438929.1:26158604-26172414[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00058 0.049 15.0 1.9 2 23 284 305 283 305 0.97 2 10 0.0008 0.067 14.5 0.3 1 23 312 335 312 335 0.95 3 10 0.00017 0.015 16.6 3.9 1 23 366 389 366 389 0.96 4 10 0.00028 0.024 16.0 1.3 1 23 393 416 393 416 0.94 5 10 0.23 20 6.8 0.1 2 23 461 481 460 481 0.96 6 10 0.00087 0.073 14.4 0.3 1 23 489 512 489 512 0.97 7 10 0.00078 0.066 14.6 0.2 2 23 522 544 521 544 0.95 8 10 0.00011 0.0097 17.2 3.2 1 23 550 572 550 572 0.98 9 10 1.8e-06 0.00015 22.9 0.1 1 23 578 600 578 600 0.98 10 10 0.009 0.76 11.2 0.6 1 21 606 626 606 627 0.95
Sequence Information
- Coding Sequence
- ATGGCAAAGTTTGAATTTTGTCGAATATGTTTGGTACAGAATGTTAGTATGCATCAGATATCGGAGTCGGCGGTGCGGGATGTTTATGAGAGAATAACTAATAAGAAGATTCTTGAGGATGGCAGTCGACACTATGCATGTTACATATGCTATCGTCAACTGCAGAAGTGTAAACAGCTTATTATTAAAGCTCAGAGGGCTGAGGACCTTCTCAGACAAGTTTTGACAGATGAGTATGAGCTGAATACACAATCGCTTACCCTTATAAATAGGCAGGCACACGGCCTAACAAGCACAATGACAAAAAGCTGTGTGGAGTTCTTGAAAATACAGGATAAAAAtggaatagaaataaaaattaaatgtgaaGATGTTATAGTGAAAAAAGAACCAGAGGAAATTGataCACCAGAGGCACCACTAGATTTCAATGCGGGCTCTCCGAGCATTTTGAATGATGACGACATCACAAATTGCACCATTGAGGACATATCAAAACCCCTTGATTTACCAAGTGCAACTGTTGCGGTTAAACCAGAAATCACAGAGAATTGTGATCTTAGTAACAAAGAAGCTAAACCTTATTGTGgtataaataatagcaatcaAGATGAGTCGAAAAGTTCTTGTGATAATGACCCTGATGACAATAATGGTTCTCAATCAAGTTGTTCAGATTCTGAAGACGATATACCTCTAAAGAAGTTAATCACCAAACtgaatgttaataaaaaaatcaggattGGAAAGGACaaagTGGACGCGCGCGAAATTatactaacaaaaaaacaacagattCAAAATGTCCTAGATAGGTCTAAATTGTCGCAGTACACCAAGGCCCCATGGAAATGTGATCACTGTTATCGAGGCTTTTATATGCCCAAGGCTTATGAGACCCATATGAGAAGACATGATCCGATCAGCGGTGCGCATGCATGCGATATATGCAAGCTGAGGTACAGGACAGCGTACCTGCTGAGAGGTCACATAGCGACTGCGCATGCCAGGTTGTACAAATGCAATAGATGTGAACATGCGTCGCATACTGTgaATCAAGCTAGTGAGCACGAGAGGTGGCACAATGGATACACATATGACTGTAAAGACTGCGGGCAAAAGTTCAGgAACTCCAGCACGTGGCACTCGCACAAGCGCAATAGCCATCCGACCGAGCATGTGTGTGAACTTTGTGGCGAAAGCTTTATCAGTAGCCATGGGTTGAAGCTTCACAAGAGCGTGTCACACTCTGGCGACCAACAgTGTGTGCCGGAGCGTCGCGCGGAGTGGTGGTGCGACGCGTGCAGCGTGCAGTTCCACTCGCAGCTCGCGTGGCAGCGACATCTGCTCGGCGCCGCACACGCGGACGATCACGGGTCTCAATGCAGATTATGTGGCAAGGAAGTGTCGGCAGGGTCCATGGCTGAGCATATGAAGGAACACAAACAGCAACTCCTGAGGAAATATGCGTGCGGACATTGTACCGCGACGTTTGCGGAAAGCGCGAACGTCAAGAGTCACATGTTGCGGGTGCATCTTGGAATCAAGAAAACCAAGAAAAAGGTTTGCGAGGAGTGTGGGATGAAGTTTATGaCAGAAAAAAACCTCTCTCTACATGTAATGGTAACACACAGGGGACTGAAGCCGTTTCCCTGTTCATCATGCCACAAGAGATTCCCCACCAGTTATCAGCTCCTGCTACATTCCCGAACACACTTTACAGAAAAGCCTTTTGTGTGCGACATGTGTGGCAAAGGATTCAGCGGTAAGAGCTTACTGGATAGACATGTGAGGGTTCACACAGGGGAGAAGCCCTACAAATGTCCGGATTGTATGATGGACTTTTTCGACAGCAGATCATTGAGGAATCATAGGATGAAGTGTACTTATGCTTAA
- Protein Sequence
- MAKFEFCRICLVQNVSMHQISESAVRDVYERITNKKILEDGSRHYACYICYRQLQKCKQLIIKAQRAEDLLRQVLTDEYELNTQSLTLINRQAHGLTSTMTKSCVEFLKIQDKNGIEIKIKCEDVIVKKEPEEIDTPEAPLDFNAGSPSILNDDDITNCTIEDISKPLDLPSATVAVKPEITENCDLSNKEAKPYCGINNSNQDESKSSCDNDPDDNNGSQSSCSDSEDDIPLKKLITKLNVNKKIRIGKDKVDAREIILTKKQQIQNVLDRSKLSQYTKAPWKCDHCYRGFYMPKAYETHMRRHDPISGAHACDICKLRYRTAYLLRGHIATAHARLYKCNRCEHASHTVNQASEHERWHNGYTYDCKDCGQKFRNSSTWHSHKRNSHPTEHVCELCGESFISSHGLKLHKSVSHSGDQQCVPERRAEWWCDACSVQFHSQLAWQRHLLGAAHADDHGSQCRLCGKEVSAGSMAEHMKEHKQQLLRKYACGHCTATFAESANVKSHMLRVHLGIKKTKKKVCEECGMKFMTEKNLSLHVMVTHRGLKPFPCSSCHKRFPTSYQLLLHSRTHFTEKPFVCDMCGKGFSGKSLLDRHVRVHTGEKPYKCPDCMMDFFDSRSLRNHRMKCTYA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -