Basic Information

Insect: Lapara coniferarum
Gene Symbol: -
Assembly: GCA_949316025.1
Location: OX438929.1:2366719-2374608[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.15 13 7.4 2.8 2 20 34 52 33 55 0.92

2 12 0.0078 0.66 11.4 1.8 1 23 93 116 93 116 0.92

3 12 0.00017 0.014 16.7 0.6 1 23 118 140 118 140 0.97

4 12 6.7 5.7e+02 2.2 1.0 1 23 149 171 149 171 0.80

5 12 9.2 7.8e+02 1.8 0.0 1 23 176 198 176 198 0.93

6 12 1.1e-05 0.00096 20.4 0.1 1 23 289 312 289 312 0.92

7 12 0.00078 0.066 14.6 0.2 1 23 329 352 329 352 0.95

8 12 0.00061 0.051 14.9 0.2 3 23 359 381 358 381 0.95

9 12 0.016 1.3 10.5 0.1 1 20 414 433 414 436 0.94

10 12 0.0009 0.076 14.4 0.7 1 23 442 464 442 464 0.97

11 12 3.6e-07 3e-05 25.1 0.7 1 23 470 492 470 492 0.98

12 12 8.4e-05 0.0071 17.6 0.3 1 23 498 521 498 521 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.15	13	7.4	2.8	2	20	34	52	33	55	0.92
2	12	0.0078	0.66	11.4	1.8	1	23	93	116	93	116	0.92
3	12	0.00017	0.014	16.7	0.6	1	23	118	140	118	140	0.97
4	12	6.7	5.7e+02	2.2	1.0	1	23	149	171	149	171	0.80
5	12	9.2	7.8e+02	1.8	0.0	1	23	176	198	176	198	0.93
6	12	1.1e-05	0.00096	20.4	0.1	1	23	289	312	289	312	0.92
7	12	0.00078	0.066	14.6	0.2	1	23	329	352	329	352	0.95
8	12	0.00061	0.051	14.9	0.2	3	23	359	381	358	381	0.95
9	12	0.016	1.3	10.5	0.1	1	20	414	433	414	436	0.94
10	12	0.0009	0.076	14.4	0.7	1	23	442	464	442	464	0.97
11	12	3.6e-07	3e-05	25.1	0.7	1	23	470	492	470	492	0.98
12	12	8.4e-05	0.0071	17.6	0.3	1	23	498	521	498	521	0.97

Sequence Information

Coding Sequence: ATGGCTTCCACATTCGAAATGGCAACAAAGGAGTTAGTCGACCTGAACGAGTTGTACTCGATCCGTAAGCCGACCACGATAGACTTGATTGGCGGTATCTACTGCCACATTTGCGAGACCACGTTCCATACCAAGAAAGAGTACGACAACCATTACCCCCAGCACGAGACGGGCGCGCAGGACATCGTGTACACATGCGTGGTGTGCCGCAAGCAGTTCGCCGGCTACCCCAGCTTCCGCGGACATTGTTACAGCAAGCATGTCAACAAGGATCGGTTCAAATGTGAACATTGCTCCAAATTATGTTCTAAATCGGCAGCGCTCAAAATACACGTGGCGGCCATGCACACATTTATATGCTCATCATGCAACCAAAAATTCTCAACAAAAAACGATTTAGCGATGCACCAAATTGTCCACAAAATGGAGAAGTCGAAGGCCCCGCATCAATGCAACAGCTGCGGCGAGAGTATACAAAACCTGGATATGTGCGAGCTGCACATCGAGGAGCACAGCAGCACAGAGTACCCGTGCCTCATCTGCGAAGACACCCTGCCGAGCAAGCCAgacgccatccagcacctgacCAAACACTTTGGCGACGTACTTATCGACGAGCCCGGAATGGAAGAAGAAGACGAAGAATCAAGGCCACTGTCCGAGGACTCATCTATAGACGTGATCGGCGGCATACTCTGCTGCTTCTGTGACGAACTCTACAAGAACAAGATAGACTTCGACCTACACTTTGTGACCGAGCATGGAGACAAAGAGCTTGTCTACACATGCATCATGTGCAACAAGAAATACGACAAGTACAACCCGTTCGCGAACCATTACTATTTCCATCTATCCAAAGACAAATTTGAATGCGACGAGTGCGGCAAGACGTTCCCGCGCCTGTCGCTGCTGGTGGTGCACACAGAGGCGTTCCACCCGCCCGCGGCCGCCGCGCGGGGGGAGGGCGGCGCGGACGGCAAGCCCTTCGCGTGCTCGGAGTGTGGGCACGGGTTCGGCACGGCGTCGCGGCTGCGGCTGCACTGGCGCGAGGCGCACGCGCGGGAACACGTGCTGTGTCCGCAGCGCGGGTGCGGGCGCGTGTTCTCCTCGCCGCACGCGCTGCTGCTGCACGCGCGGGACCACGGGCCGGCGCACGCGGCGCTGTGTCGCCACTGCGGGCTGCGCCTGCTGACGCGCGCGGCGGCCGAGCGGCACCTGGCGCTGCACCGCGTCAAACACTACGCGTGTCCGGTGTGCGCGCGCGTCTACCGCGAGAAGTACCTGCTCGTGAAGCACGTGCCGCAACACTTCGAGACGGTGCTGCACGTGTGCAAGGTGTGCGGCAAGTCGTACGACGCGCGCTCGCGCCTCATCGAGCACGCCAAGTCGCACGCGGTGCAGCGCGCCCACACCTGCTCCTACTGCGGCAAGGGGTTCGTGAAGCCCTCGTTGCTCGAGCAGCACATGAACGTACACACCGGCCGCAAACCATTCAAGTGCACCAACTGTCCTAAGGCTTTCGCCAGCTATCCAAACTGGGCGAAGCATCTACTACGCATGCACAGAGTCGATCACAAACTACTCAAGAAACAGCTGCCGATTGAAACTGAAACGAAAACGAATCATGAAACAGTATCACAACAAACAATTATGGAGCAAACAACAGCTGAGATGGCCTGGGTGGAGGCGAGGGAGACAATGCAGACAGTGGAAAGCGTAGAGGCACTTGAGCCGACAGTTTTCCCGGAGGTACTGGAGGCGTTCGAACCGGGGGTTTCGACAGAGTCCACACTGCAAGTGACCGCGCAGGCGATGACGCTGCCGGGCGACTCGGACGACAGCACGCTCGATGGTATCGACACGCGCCTCATCGAGCGTGAGCTGCAGATGTTCTGCGACACCAATAACACCGCGCAACACGCCATCGAAGACTTCGAGTTCGAGGACATGCTGTCTGATGATGCCACTATGCTTATCACCGAACCTCTCTCATGTCCGCCGGAGGTGGTGCCGCGCGAGTACGGTCCGGAGTTCGTGAACCAGGGCGCCACCGCTGCCGGTGCTGTCATCGACCTGGACGACCACATCATGCCGCACATCGACCCGCTGCTCACCATCAAGCAGGACGCGTGGCAGCCCGCCTACCAGCCGCTGTACGAGCCACTCTACCAGCCACTGTACCCGCCGCTCTACCAGCAGCAGTGTCCCTCGTACGAGGAACTCGCCGACGTCTCGCGAGCCCTCCTCACAGACATATTCTAA
Protein Sequence: MASTFEMATKELVDLNELYSIRKPTTIDLIGGIYCHICETTFHTKKEYDNHYPQHETGAQDIVYTCVVCRKQFAGYPSFRGHCYSKHVNKDRFKCEHCSKLCSKSAALKIHVAAMHTFICSSCNQKFSTKNDLAMHQIVHKMEKSKAPHQCNSCGESIQNLDMCELHIEEHSSTEYPCLICEDTLPSKPDAIQHLTKHFGDVLIDEPGMEEEDEESRPLSEDSSIDVIGGILCCFCDELYKNKIDFDLHFVTEHGDKELVYTCIMCNKKYDKYNPFANHYYFHLSKDKFECDECGKTFPRLSLLVVHTEAFHPPAAAARGEGGADGKPFACSECGHGFGTASRLRLHWREAHAREHVLCPQRGCGRVFSSPHALLLHARDHGPAHAALCRHCGLRLLTRAAAERHLALHRVKHYACPVCARVYREKYLLVKHVPQHFETVLHVCKVCGKSYDARSRLIEHAKSHAVQRAHTCSYCGKGFVKPSLLEQHMNVHTGRKPFKCTNCPKAFASYPNWAKHLLRMHRVDHKLLKKQLPIETETKTNHETVSQQTIMEQTTAEMAWVEARETMQTVESVEALEPTVFPEVLEAFEPGVSTESTLQVTAQAMTLPGDSDDSTLDGIDTRLIERELQMFCDTNNTAQHAIEDFEFEDMLSDDATMLITEPLSCPPEVVPREYGPEFVNQGATAAGAVIDLDDHIMPHIDPLLTIKQDAWQPAYQPLYEPLYQPLYPPLYQQQCPSYEELADVSRALLTDIF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01359137;
90% Identity: iTF_01359137;
80% Identity: -