Lcon026525.1
Basic Information
- Insect
- Lapara coniferarum
- Gene Symbol
- -
- Assembly
- GCA_949316025.1
- Location
- OX438932.1:834783-837078[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00011 0.0096 17.2 3.2 3 23 174 194 172 194 0.97 2 10 9.6e-05 0.0081 17.4 0.1 1 23 199 222 199 222 0.95 3 10 0.00054 0.046 15.1 2.1 2 19 228 245 227 250 0.89 4 10 0.0017 0.15 13.5 0.5 3 23 255 275 254 275 0.97 5 10 0.034 2.8 9.4 3.5 2 21 279 298 278 303 0.95 6 10 9.2e-05 0.0077 17.5 0.5 1 23 310 333 310 333 0.96 7 10 0.0015 0.13 13.7 0.3 2 23 340 361 339 361 0.95 8 10 6.2e-05 0.0052 18.0 1.8 1 23 367 389 367 389 0.98 9 10 0.082 6.9 8.2 0.6 1 23 395 418 395 418 0.93 10 10 0.00088 0.074 14.4 3.0 2 23 424 445 423 445 0.97
Sequence Information
- Coding Sequence
- ATGCAGAACGAAGTGGAAGTAACATTGCCCGCGTTGAAATACTTGACAGGCGAAACAGAACACGTTTGTAGGTTATGTTTTGCTTCGACTGAAGGGGCAGAGATTTCTATAGAGGACACTACGAGACTCCAGAGACCTTATATTGATGAAAATGTGACTTTTTCCGACATGCTGCAAGAGTTAGGGGTAACATCAGAACTTGAGTTACCCCAAGAACTGTGCTCAAATTGTGCCTCAATGACAATGAACTCCTATTTGTTTCGTAAACTTTGCGAGCAAGCAAATGAAAGGTGGAATGATGTTTTAAACAAGTTTAACAAAACATTGGACCAGTCTGACTCAGTGGGACCTAACGTACAAACAGTGTACTTGATGATTCATAgaaatgaaaattttatgttTACGAGTAAAAAGAGTCACACATTGAAAAGCAAAAAGATTGTCCTCTCAAAAATAAAAGACATACTCAAAAGCAGAGAAACTTATGTGAAAGTGCGTCAGAAAAGTTCAAATATTATATGTGAGGAATGTGGGGAGAGGTTCAAGTCAAACTGCCATCGGGTGAAGCACATGCGAGTGCACAGTGATACACGGTATCCCTGCCCACAATGTACTAAAGTGTTTGCATCACAACTCCAACTGGAAGACCATGCTGAAAGAGTGCACTATCCAAAGAGAATACAATGTCCCAAGTGTTCGAAAATGTTCAGCACAAACAGAATGCTCAAGCTCCATGACAAGTTGCATCATATTGCAGCTATATGCAAACTTTGCTTTATTCAGTTCCCATCAAAGAAAGATCTAAGAGCTCATTTAGACAAACATGATGTAAACAAGTGCCCTCGCTGTGATAAATCTTTTctcaataaacatacatataaatatcacTTGAAAATATGTGGCAAAAGTGATGAACGACAACCTAGCTTCTTTTGTGACATATGTAGTAAAGGATATGCTCGGAAGAATGGTTTACGATCACATTTAAAGATTGATCATGGGTTCGGTAATGTTCTTTCTTGTAACTGGTGTGGTAAAAAGTTTGATGCAATCAGTAGACTGAGAAATCACATTGTAAAACATACCAAAGAGAGGAATTATCACTGTGAGCATTGTGGTAACAAATTCGTAACACAAGCTGCATTAGTTTATCACATACGATTACATACAGGCGAGAGGCCTTTTCCTTGTGATTTGTGTGGGGAAAGCTTCCTTTCAGCATCAAGAAGGATGGAGCATAAGAGACGGAAACATTTCGGCCCAACCAAAGAATGTCCAGTTTGCCATGTTAAGTTTGTTACTGGACATCAGCTTAGAAAGCATGTACAGAGACATTACAATCCACAGAGTAAGCTGTTTGTTCCAGAAGCTAATGTAAAACCAAATGATATAACACACATAGTGGGGCAAGAATACTCCAAAATTGCAAATTTATTGACATTGTAG
- Protein Sequence
- MQNEVEVTLPALKYLTGETEHVCRLCFASTEGAEISIEDTTRLQRPYIDENVTFSDMLQELGVTSELELPQELCSNCASMTMNSYLFRKLCEQANERWNDVLNKFNKTLDQSDSVGPNVQTVYLMIHRNENFMFTSKKSHTLKSKKIVLSKIKDILKSRETYVKVRQKSSNIICEECGERFKSNCHRVKHMRVHSDTRYPCPQCTKVFASQLQLEDHAERVHYPKRIQCPKCSKMFSTNRMLKLHDKLHHIAAICKLCFIQFPSKKDLRAHLDKHDVNKCPRCDKSFLNKHTYKYHLKICGKSDERQPSFFCDICSKGYARKNGLRSHLKIDHGFGNVLSCNWCGKKFDAISRLRNHIVKHTKERNYHCEHCGNKFVTQAALVYHIRLHTGERPFPCDLCGESFLSASRRMEHKRRKHFGPTKECPVCHVKFVTGHQLRKHVQRHYNPQSKLFVPEANVKPNDITHIVGQEYSKIANLLTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00787967;
- 90% Identity
- iTF_01359157;
- 80% Identity
- -