Lcon011289.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lapara coniferarum
Gene Symbol
-
Assembly
GCA_949316025.1
Location
OX438923.1:37646629-37662427[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 7 0.00015 0.012 16.9 1.2 1 23 401 424 401 424 0.95
2 7 5.7e-05 0.0048 18.2 1.1 1 23 624 646 624 646 0.98
3 7 1.4e-05 0.0012 20.1 0.1 2 23 652 673 651 673 0.97
4 7 2.7e-06 0.00023 22.3 0.3 1 23 679 701 679 701 0.97
5 7 4.9e-07 4.1e-05 24.7 1.4 1 23 707 729 707 729 0.99
6 7 1.7e-05 0.0014 19.8 3.3 1 23 735 757 735 757 0.99
7 7 2.3e-05 0.002 19.4 4.1 1 23 763 785 763 785 0.98

Sequence Information

Coding Sequence
atGAGGAACGTTGGTGCTCATCTTTTGGAGGACAAGATGGACGAGGCGGTTAACCAATATATAAATTCTCATCAGGCAGGCCAGCCAGTGCATGTGAACACCAACCCCCTGGCTCTCAATGTACAAGATGATGGAGGTGGGAGAGTCACAGTTATGCACACACAGAACTTCACTACACAAATGTGCAGACAAGTATCAGTGGGCGAGCCGGTTCCTGAAGGACAATGGGGGGAGGAGCTTCTGGATTCGGACAGCAGGATCGCGGCCATCGTGGCCCAGCTGGCCCAACATTCACGCGCATCCCACCACCAGCCCCATCACAAGGTGCAGACAGTCAGGAGCGATGTCGATGCATCTGTCATACTTGATGGGTCCATGAGGCTTTTCAATGCGCAGACTTTGgatcAACAGGAATCCATAGTAGTCCACGTGCCCACGCTGCCTCCCCTGCCGCCGCTGCAAGAGATGAAGAGATGCCAGGAAGCTGGATGGTTCAACAATAAAACGAAGACCGTAGTGCCGCTAAAAGATGACACACCAATGCTAGCGGAGTCTGACAGTTCTGTGCTTGAGCTGGGCCCGGGCGCATCCCCCGCTCACCACAAGCAGCAGAACAAGAAGAGCTTGCCACACAAGAAGAGGATATCTAGGAAGTTAAAGAAGAACAACGGCAATAGTACACCACAACAGGGTATAGTGGTAATAAACTGCAACGAAGATGTTCAGCATGAGGAGATCCTTCCGGACAACTTTGTGACTGCTGTACAGCATCAGGAGCAGCTGCCGGAAGAAACTCATCACATCACACATGAGGTGCGTGCGATCCTGTTGTGCCAATTGTGCGGTGGGTTCTACGGGGAGGACCAACTGAAGTTCTACCACCACCTCAAGCAGCACTACGAACCGCAAGCCATCATCATCGAAAACCCCGTACCTGACTTAGCTATAGAtaagATAACAAATACCTGTATAGTGGACAACGCATCAACACTCCCAGACTCGATCGTAGAACTGTCTCTAGAGAACACAGTGCCCAAAACAGTGTATCAAAGCATAGACAAACACATCCTGTACACGTCGAGCGATAAGACTCTCAACTACGCTACGAATAAGGTGCAATACTCCATGGCGAGTATGGACAAGGAACCACACACGGTTGATAAGGCAGATTTGTATGACACGTTAGATAAACTCGACATGTATAATTGTGCGAAGTGTGACAAGAACTTTAGGAAACAGAAGCAGTTCGAAGCTCATGTGAAGGAGGTGCATTGCAGCGCTAAGTTGGAAGACATGGGAGAGTTCAGCGAGCCCGAGGATCTAATGGAGGGCATCCACGTGACGGTGGACGTTGACGCGGAGCAACCGGACCGCTCGCACCCTGGGGCCGACCCCACGGACCCCGACTATGACCTCTCGCTGCTCCCGCATCTCACGGTGGAGAACGGACACGTGCATCAGGACCACGTCAGGCATTGGTATCTCCGTGGGGCGTGTGGGGCGGCCTGCGGACCCGACGACTCCTACTGCCCCGTCTGCAACGTGCCACCAccgccaccaccaccaccaccaccaccaccaccaccacatcCCACGCATCCCACACATCCCACGCATCCCACACACCCAACACACGCGCAAACCAACACACAGACCAACACCACACACACAACAGTCACCAACCCTCCCAGAGAACACGAACAGCCTGCCATGAAGATGATGCTTAAAGAGGAAGTCATCCAACGGATATTGGACACGGGCGTGAACAACGAGCACATGCTATCAGACAACGTGATGGTACCCGAGGACCCACCACCTGAAGACTCCCAGCCTACCACCAAGGCCAGCAAGAAGAAGGGCGGCAAGAAGTACTCGTGTGGTCAGTGTGGCCGCGTGTTCGACCATCGCAGCAGCCTGCTGTACCACGTGCTGTCCCACGGGGGCAGGCAGCAAGTGTGCCGGGACTGCGGGAAAGGGTTCTACACCGCTGGTGCCTTGAAGatCCATCGTCGCGTGCACAATGGCGACCGCCCGTACAAGTGCGACGTGTGTGGACGAGACTTCCGCCAGTGGAGCGATCTCACCTACCACAAGGCCATACACTCCAAACAGAAATGTTTCAAATGCGAGTTTTGCGGCAAGGAGTTTGCGCGCAAGTACTCGCTGAACGTACACCGGCGCATACACACCGGCGAGCGGAACTACAAGTGCGAGTACTGCAACAAGACCTTCCGCGCCTCCTCCTACCGCCTCAGCCACATGCGGACGCACACCGACGACAGGCCGTACAAATGCGAGCAGTGCGACAAGTGTTTCCGCGTGGCGTTCGACCTGCGCCGGCACTTCCTCACGCACGAGAAGGCCCGCAACAGGGTCGAGCAGAAGCCCAAGGTCAAGGAAGAGAACGGACAGAAGCCAGAAGAAGACGCCAAAGAACCACCGTCCAAAGTCAAGAAGATCGCAGTCGCCTCCACCACCAGGCTACCGACTGTCCTCAAAGTCGATAAGAAACAGAAGCCGGCGAAAAAGAACGCGAAAAAAGGTGCTCCGAACGTCACGGTAGGACAAGTTAATGGGGAGTTTAAACTTAATTCTGAATTTACGAACAATGTTGAAGTATTCGACACAAGGCAAGAAGGGTACAGTAAATTTAAGGATGCGTACAACGAAACCTACAAACCCAGCAACTACAAAGAAGAGGATAGTGACAGAGACTTTGCGGTACTCAAACCGATGCTAAGGAGTAATGTGTTAGAGGAACCCGATAAGCCTGTGTACGCTAGAACTGAGAATACTGATGGCAAAATGCAGATCTACACACATGTAGAGAAGAAGGAGTATTCTGGTCCCATAGTGCAGAACTCTCAGGTAATAGGTGACAGGCATATAGAGCGGGATGTGAGGACTGACATGACAGCTGATGGTATCGAACACGGCTTCCTAGAAAGGTTGACGGCATTGTACAATATACCGGCTGTGTGA
Protein Sequence
MRNVGAHLLEDKMDEAVNQYINSHQAGQPVHVNTNPLALNVQDDGGGRVTVMHTQNFTTQMCRQVSVGEPVPEGQWGEELLDSDSRIAAIVAQLAQHSRASHHQPHHKVQTVRSDVDASVILDGSMRLFNAQTLDQQESIVVHVPTLPPLPPLQEMKRCQEAGWFNNKTKTVVPLKDDTPMLAESDSSVLELGPGASPAHHKQQNKKSLPHKKRISRKLKKNNGNSTPQQGIVVINCNEDVQHEEILPDNFVTAVQHQEQLPEETHHITHEVRAILLCQLCGGFYGEDQLKFYHHLKQHYEPQAIIIENPVPDLAIDKITNTCIVDNASTLPDSIVELSLENTVPKTVYQSIDKHILYTSSDKTLNYATNKVQYSMASMDKEPHTVDKADLYDTLDKLDMYNCAKCDKNFRKQKQFEAHVKEVHCSAKLEDMGEFSEPEDLMEGIHVTVDVDAEQPDRSHPGADPTDPDYDLSLLPHLTVENGHVHQDHVRHWYLRGACGAACGPDDSYCPVCNVPPPPPPPPPPPPPPHPTHPTHPTHPTHPTHAQTNTQTNTTHTTVTNPPREHEQPAMKMMLKEEVIQRILDTGVNNEHMLSDNVMVPEDPPPEDSQPTTKASKKKGGKKYSCGQCGRVFDHRSSLLYHVLSHGGRQQVCRDCGKGFYTAGALKIHRRVHNGDRPYKCDVCGRDFRQWSDLTYHKAIHSKQKCFKCEFCGKEFARKYSLNVHRRIHTGERNYKCEYCNKTFRASSYRLSHMRTHTDDRPYKCEQCDKCFRVAFDLRRHFLTHEKARNRVEQKPKVKEENGQKPEEDAKEPPSKVKKIAVASTTRLPTVLKVDKKQKPAKKNAKKGAPNVTVGQVNGEFKLNSEFTNNVEVFDTRQEGYSKFKDAYNETYKPSNYKEEDSDRDFAVLKPMLRSNVLEEPDKPVYARTENTDGKMQIYTHVEKKEYSGPIVQNSQVIGDRHIERDVRTDMTADGIEHGFLERLTALYNIPAV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01010653;
90% Identity
iTF_01359131;
80% Identity
-