Basic Information

Insect: Lapara coniferarum
Gene Symbol: -
Assembly: GCA_949316025.1
Location: OX438929.1:24375256-24396290[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0034 0.29 12.6 0.2 1 23 221 243 221 243 0.97

2 10 0.02 1.7 10.2 1.7 1 23 247 270 247 270 0.90

3 10 3.1 2.6e+02 3.3 3.4 1 20 280 299 280 301 0.91

4 10 2.9e-07 2.4e-05 25.4 0.6 2 23 303 325 302 325 0.97

5 10 0.00013 0.011 17.0 0.1 1 23 332 355 332 355 0.98

6 10 0.14 12 7.5 1.9 3 23 364 384 363 384 0.95

7 10 3.3e-06 0.00028 22.0 0.2 1 23 395 418 395 418 0.94

8 10 2.5e-05 0.0021 19.3 2.3 2 23 425 447 424 447 0.93

9 10 7.1e-05 0.006 17.9 0.1 3 23 458 478 457 478 0.98

10 10 0.0003 0.026 15.9 4.5 1 23 484 507 484 507 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0034	0.29	12.6	0.2	1	23	221	243	221	243	0.97
2	10	0.02	1.7	10.2	1.7	1	23	247	270	247	270	0.90
3	10	3.1	2.6e+02	3.3	3.4	1	20	280	299	280	301	0.91
4	10	2.9e-07	2.4e-05	25.4	0.6	2	23	303	325	302	325	0.97
5	10	0.00013	0.011	17.0	0.1	1	23	332	355	332	355	0.98
6	10	0.14	12	7.5	1.9	3	23	364	384	363	384	0.95
7	10	3.3e-06	0.00028	22.0	0.2	1	23	395	418	395	418	0.94
8	10	2.5e-05	0.0021	19.3	2.3	2	23	425	447	424	447	0.93
9	10	7.1e-05	0.006	17.9	0.1	3	23	458	478	457	478	0.98
10	10	0.0003	0.026	15.9	4.5	1	23	484	507	484	507	0.95

Sequence Information

Coding Sequence: ATGGCCGacgtgaatcctactaatattataaacgcgaaaATGGAGTGTCAGAATAACTTTGTGTGCATACTATGCCATCGAATGTTGCAAAAAATAGACAAATTCAAGCAACAAGTTGAACACAGTGTACTTGTTTTGAATGagcagATACCAGATATGAAAATCTCAAAATTCCCTCATctgcaaatatcaaaaatagaAACTACAACATCGCTTGACCACAATGATTCCAAAAATGAAAGCATAGACGATGATTGTAAAAGCGAGAATGAGCTGCATTGCGATGACTATATGGTCCATTATGACATAGCTACTGAGGTGAAGGTGGAACGACATTCGTCTGACCAGGATGTGCCGCTGGCCGAAGTGCAGAAACAGAGGAAAAGAAAGACAAAGGAGTTAAATAAGGGTGAAAAACACGCAATTTCACAAGATAAACCACcagaaaaacaaataataatccaAATATTGGAAGAAAAGTACCCCGGCAAGCTGCGAACAGTCACTCTCACCGAGCAAGAGATGCTAGAAGAGAGAATGGAGTTGAGTCGGGAGGAGAAGTACCTCCGGTTGCCTTTCAAGTGTGAGAGCTGCATTGTCGGGTTCGAGTTTGAGATGGCGTTGAAAAATCATAACGAGAAGCAACATAATaagATCGGATTCGCATGCGAATTGTGCAAGTCAGTGCTGAGTTCCGCCTCGTCTCTGAGGGAACATGGTAGAAGACACCTCAGAAGACACGAATGCACAATATGCAAGAAGCGATACAGGGATGAATACAGCGCAGTGCAACACTTCAACGAGCTGCACAGCGAGGCTGGACCGATTATGCTCGAGTTCGAGTGTTCACAGTGCGATTTCTCTACACGCTTGAGGTATCACAAGTCCAAACACAAGGACAAGGATAAATGTAACATTTGTGGAAaagaatatagaaataaaagCAGCCTCAATATACACATGTACACTCTGCACAAGCAGTCGTCGCGCGTGTACAAGTGCGAACCGTGTGGCAAGGTGTACCGCGGCAAGCCGGGCCTGTTCAATCACCTGAGAACAGCGCACGACACCACCGACCGGCGCGCGTACTGCGTGTCGTGCCGCACTTATTATCAGACCGCGAACAGTTTGGCCCATCATTTGCGGACGCATTCGAGTCATATCACTGAAGCGGAGAAGAAGTTCAGTTGTGATGAGTGCGGATTACGGTTTGTATCGAAGTCTAGCCTCAAAAGTCACATAGAATGGGAACATCTTGAACTAAGGAACAATAAGTGCACCAAATGTTCTAAGGTGTTCCGGAGAAGTACAACATTAAAGAAGCATGTGGAGTATGTGCATGATAAGAAACGACCGCCGCGGAACAAGATTTGCGACTATTGTGGACAGGGGTTTACTACCGCAGCGATCCTCCGCTCACATATTCGCACGCATACTGGTGAGCGGCCCCACCGCTGCACGCACTGCGGGGCAACCTTCGCGCACTCTTCGGCGTTGTACAACCATAACAGGCTGTTACACAACCCTGAGAGGGATAGGAGGCAGTAG
Protein Sequence: MADVNPTNIINAKMECQNNFVCILCHRMLQKIDKFKQQVEHSVLVLNEQIPDMKISKFPHLQISKIETTTSLDHNDSKNESIDDDCKSENELHCDDYMVHYDIATEVKVERHSSDQDVPLAEVQKQRKRKTKELNKGEKHAISQDKPPEKQIIIQILEEKYPGKLRTVTLTEQEMLEERMELSREEKYLRLPFKCESCIVGFEFEMALKNHNEKQHNKIGFACELCKSVLSSASSLREHGRRHLRRHECTICKKRYRDEYSAVQHFNELHSEAGPIMLEFECSQCDFSTRLRYHKSKHKDKDKCNICGKEYRNKSSLNIHMYTLHKQSSRVYKCEPCGKVYRGKPGLFNHLRTAHDTTDRRAYCVSCRTYYQTANSLAHHLRTHSSHITEAEKKFSCDECGLRFVSKSSLKSHIEWEHLELRNNKCTKCSKVFRRSTTLKKHVEYVHDKKRPPRNKICDYCGQGFTTAAILRSHIRTHTGERPHRCTHCGATFAHSSALYNHNRLLHNPERDRRQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01359116;
90% Identity: iTF_01359116;
80% Identity: -