Lcon003264.1
Basic Information
- Insect
- Lapara coniferarum
- Gene Symbol
- -
- Assembly
- GCA_949316025.1
- Location
- OX438920.1:16627683-16644540[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0011 0.095 14.1 2.5 1 23 129 151 129 151 0.98 2 12 0.21 18 6.9 1.9 1 23 158 181 158 181 0.97 3 12 0.18 16 7.1 2.5 1 23 185 207 185 207 0.96 4 12 0.00039 0.033 15.5 0.5 1 23 212 235 212 235 0.97 5 12 1.8 1.5e+02 4.0 0.5 2 23 240 262 239 262 0.89 6 12 0.037 3.1 9.3 1.2 3 23 274 295 273 295 0.92 7 12 7e-05 0.0059 17.9 6.5 3 23 302 322 301 322 0.97 8 12 0.00083 0.07 14.5 1.7 2 23 336 358 335 358 0.95 9 12 5.1e-06 0.00043 21.5 0.3 1 23 375 397 375 397 0.98 10 12 0.0013 0.11 13.9 1.0 1 23 403 425 403 426 0.93 11 12 1.2e-05 0.001 20.3 5.8 1 23 431 453 431 453 0.98 12 12 1.2e-06 0.0001 23.4 1.6 1 23 459 482 459 482 0.97
Sequence Information
- Coding Sequence
- ATGAAAGCAAATAAAAATGATGCCACTatggtgaaaaataaaatgcacaCAGAAGGAAATCAAAATACTCTTAATGAGGACACTGTAGAATTTACAAAGGACAATAATAGTGATGATGACTGTGAAATTATAGAAGAATATCTTGAATCAGAAGAAGACAGCTTCTTTTCTGAATCTCCtaacgaaaataataaatatttatatgctaTAGTGCCCACTAATGAAAATACCAAAGGCTCTGAAACTGTTAAAACTAAAAggcaatttgatattttaaatgcaAAGTTTTTCGAAGGTTTTGCTAGTGTGGTAGATTTGACACCAGAAGAAGCGAAAAAAGAAGTGTTGCTTAGGAAAGAATCCAGTACTTACAAATATTGCTCACACAAATGTGACTTATGTTATAGGGCATTTGAATCACAGGCTGCATTTGAAAATCATAAAAAGAAGCATACTGATatGTATGGTGTTTATGAGTGTGATTTGTGTCATTTGAGATATAACGCTAAGAGGTTTGTCAGTGCGCACATTAATAAGTTTCACAAGAGGAAGTTTATATGCAAGTTATGTCCTTATGCTTGTTTTAGTAGTGCCCAAGCTAAAaaccatacaaaatttcataaagGAAAGAAATATGTTTGCGATGCCTGTGACAAGGAGTTCAGCATGCCGAACAGTTTACTACAGCACAAGCGGTATAAACACCCGACGGAGTGTGTCTGTGAATTCTGCGGCGACGAGTTTGCAACCCCAACCGGACTCGTGTTTCACAAAAAGATGATTCATAAGCTGgaaGTAAATAATAAGCAAGGACCATGCTGTGAAGAATGTGACATACACTTCGCTAATGTCATGGCGTGGAACAGACATATGGTGCTCAAACACGGTGCCAGTAATGGGTGCTGCAAGCATTGCGGTGaattttttactaataaaaaagaacttaaatCACATTTGAAGATACACAGACATCCTCGACCGAAGATTTCACGAAAATTTCCCGTTTCTTGTAAACTTtgTAAAAAAATGTTGTCGAACAGCAAAGAGTTCAAATCGCACATGACGTCGGAACACCCGCAGTCGGACGCCACTAAAAAGATTAAAGAGAGCTATGAGAAGCGGTTTATGTGTGAAATATGTGGGAAGGCGTATAGTAAACCTTGGTTCCTGCGGTACCACCAGCGCGTGCACACGGGCGAGCGGCCCCACGCCTGCGACCAGTGCCCCCAGACCTTCGCGCTGCCCACCGCCCTCATCAGGCACCGCGAGTACCACCACCTCCGTCTGCGGCACACCTGCCGCGTGTGCCAGCGCTCCTACGACCACCGCAGTAACCTCCAAAGGCACATGAAGATTCACCTCAACATGCGTCCACACAAATGTACAATATGCGGTCAAGGTTTCATTACCCCCAGTTCACTCAACGTGCATATAAGACACACTCATTACAAAGTTCCATGGccgaagaaaaaagaaaaaagcaaATGA
- Protein Sequence
- MKANKNDATMVKNKMHTEGNQNTLNEDTVEFTKDNNSDDDCEIIEEYLESEEDSFFSESPNENNKYLYAIVPTNENTKGSETVKTKRQFDILNAKFFEGFASVVDLTPEEAKKEVLLRKESSTYKYCSHKCDLCYRAFESQAAFENHKKKHTDMYGVYECDLCHLRYNAKRFVSAHINKFHKRKFICKLCPYACFSSAQAKNHTKFHKGKKYVCDACDKEFSMPNSLLQHKRYKHPTECVCEFCGDEFATPTGLVFHKKMIHKLEVNNKQGPCCEECDIHFANVMAWNRHMVLKHGASNGCCKHCGEFFTNKKELKSHLKIHRHPRPKISRKFPVSCKLCKKMLSNSKEFKSHMTSEHPQSDATKKIKESYEKRFMCEICGKAYSKPWFLRYHQRVHTGERPHACDQCPQTFALPTALIRHREYHHLRLRHTCRVCQRSYDHRSNLQRHMKIHLNMRPHKCTICGQGFITPSSLNVHIRHTHYKVPWPKKKEKSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -