Basic Information

Insect: Lapara coniferarum
Gene Symbol: L
Assembly: GCA_949316025.1
Location: OX438919.1:10738636-10766353[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 3.2e-05 0.0027 19.0 0.7 1 20 87 106 87 108 0.95

2 16 0.91 76 4.9 5.8 1 23 255 277 255 277 0.97

3 16 8.1e-06 0.00068 20.8 5.1 1 23 283 305 283 305 0.99

4 16 3.8e-05 0.0032 18.7 0.1 1 23 311 333 311 333 0.98

5 16 3.7e-05 0.0032 18.7 0.3 2 23 349 371 348 371 0.95

6 16 1.4 1.2e+02 4.3 0.2 9 23 402 417 398 417 0.96

7 16 0.54 46 5.6 0.1 3 23 470 490 469 490 0.97

8 16 0.0018 0.15 13.5 0.9 1 23 533 556 533 556 0.91

9 16 0.047 3.9 9.0 0.1 1 23 561 584 561 584 0.92

10 16 0.026 2.2 9.8 0.3 1 23 642 666 642 667 0.88

11 16 0.00029 0.024 16.0 0.1 2 23 729 750 728 750 0.96

12 16 0.083 7 8.2 0.0 1 23 758 780 758 780 0.97

13 16 0.49 42 5.8 1.4 2 23 788 809 787 810 0.94

14 16 1.3 1.1e+02 4.5 0.3 1 23 884 906 884 906 0.94

15 16 0.005 0.42 12.0 0.1 1 20 914 933 914 936 0.95

16 16 0.15 12 7.4 0.3 1 23 943 965 943 965 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	3.2e-05	0.0027	19.0	0.7	1	20	87	106	87	108	0.95
2	16	0.91	76	4.9	5.8	1	23	255	277	255	277	0.97
3	16	8.1e-06	0.00068	20.8	5.1	1	23	283	305	283	305	0.99
4	16	3.8e-05	0.0032	18.7	0.1	1	23	311	333	311	333	0.98
5	16	3.7e-05	0.0032	18.7	0.3	2	23	349	371	348	371	0.95
6	16	1.4	1.2e+02	4.3	0.2	9	23	402	417	398	417	0.96
7	16	0.54	46	5.6	0.1	3	23	470	490	469	490	0.97
8	16	0.0018	0.15	13.5	0.9	1	23	533	556	533	556	0.91
9	16	0.047	3.9	9.0	0.1	1	23	561	584	561	584	0.92
10	16	0.026	2.2	9.8	0.3	1	23	642	666	642	667	0.88
11	16	0.00029	0.024	16.0	0.1	2	23	729	750	728	750	0.96
12	16	0.083	7	8.2	0.0	1	23	758	780	758	780	0.97
13	16	0.49	42	5.8	1.4	2	23	788	809	787	810	0.94
14	16	1.3	1.1e+02	4.5	0.3	1	23	884	906	884	906	0.94
15	16	0.005	0.42	12.0	0.1	1	20	914	933	914	936	0.95
16	16	0.15	12	7.4	0.3	1	23	943	965	943	965	0.94

Sequence Information

Coding Sequence: ATGATCATGTTATTCAAAGGCAATAGCAGTAGGCTGGAGCATTTGATAGAGAAAATTCAGGCAAATAAAGAAAATCACGACGCCATATCAGAAGATATAAAAGAGGCGCTGGGGAGCGTAGGCAGCACGGCGGCCAGCTCTTGGCCGTCGTCGACGCCGGAGCCGTCCCCGTCGCCAGCCTCCACGCCGACGTCAGCCGACGCCGCTGACGGCGAGCCCGAGCCGCCCTTCACGCTTGGCGCCACTGAACACACTCCCTATCAATGCCAATTCTGCGATAAAGCGTTCCCCAGACTCTCCTATCTCAAGAAACATGAACAGGATTATCTGTGCGGGATTGCAGTCACCGTTGCCCTAGTGGAGATATCGATCGATGCGTGCACATCGCGACGGCCGACGAGTGCTGCGGGATGCGGCCGCCGCTCCACGCCTGCCACTAGCGGGTGTGCGCCGACAAATGTATCGGATGATGATCGCGTTCCCTTTGCGACGCGAAATCGCGACAGAGCGTTGACGGCCGGAAATAGACGCTCTCACGTTGTTGAAATTTGTTATAAAGTAAACCGTAATATTTGCGTGCCTTTAAACCATAAGCTGTGCTCGGCGTCGTGGTGGGAGCAGCACGCGGCGGACCAGCAGGACTCCGCGATGCACCCAGCGGCTCGGCCCCCGCAGCGCGACGCGTACACTTCGCGTCTTAAATTCTCAAACTACCCGAGATGTCGACAAAAGTtcaaatttACGCATTCAGACCAGATGCCATTCCGCTGCGAGTTCTGTTCAAGATTGTTCAAGCACAAGAGGTCACGTGACCGGCACGTCAAGCTGCACACCGGCGATCGCAAGTACCGCTGCTCACATTGCGAATCTGCCTTTTCCAGAAGTGATCATTTAAAGATCCACATGAAGACCCACGACAACCAGAAGCCATTCCAATGTACGGTGTGCAACCGGGGGTATAACACGGCAGCCGCCCTCACATCGCACATGCAGGGACACAAACGCGATAGAGAAGGGAGGGAGACTGAGCGACGCCGGCCTATACGCTGTCTAAGATGCGGGGAGGTTTTCCGGCACCCTGACCTTCTGCAGACGCACATGGCGAGCGTGCACGGAGTGGACTCGGCCGCTCTGACGCCACCGCAGCGCGTCGCGTCCCAGCCGCCGCCCACGCTACTTGCCTGCATTTATTGCACCCGAGATACATTTACTAGCATGGAGCAGCTTCAATTACACGTCAGGACAGCCCACTCAGCATTGTTAAACGGTGAATCGCCCATACAAGGCGTTGATCAGCCTGCGCCTACGGATCTCAGTAAACGGGCCACTGACGACGGTCCTGTGGTGAAGCGCTCACGGTCAGGCTCTGATACTCCTCAGACAACGTTGTCGCATAGCACTCTCCTTTGTAATCAGTGCGATGCAGCACTACCGGACTTCGAAGCATTTCGAACACATCTGAAGGCTCACATAGAAGAAGGGAGTGAATTGACCCGTGCGAGCCCGGCTCCATGCGTACATTGCGGATCAACATTCGCAGATGCCGCCGCTTCCGAGCGGTACCTGACATCTCATTACTTGGCCGTCTCCTGCGAATACTCGTGCCACAGCTGCGCGAGAAGTTTCTCCGCACCCGACGACCTACAAAAACATCTCTTTGATCTACACGCCCATCATCTTTACCGCTGTTCTCTATGTAAAGAGATATTTGATTCTAAAGTTGCCATACAGGTACACTTCGCAGTGGCACACAGTGGTGAAAACAAAGTGTGGGTATGTCGGTCATGCGGCGCAAGTACCGGCTCGATGCGGTCGGAAGCGGAGGGCGCGGCGCACGTGCGCGCGCGGcacgcggcgggcgcggcgcggtgcGCGTGCGGCGCGCTGCTGGCGGGCGTGCGGCGCGCGCGGCACACGCGACCCTACCGCTGCCCGGTGCCGCCCTGCACCGACACCTTCGCCGTGCAATACCTGCTCGAACGGCACATGCAGATGCACCATACTATACCGCACCagGTATTGAATGGCGACATAGCCAGAGGAAAACGCATTGAAAACAATAATGGAGGTGAAGGCGTAGATGAAGCGTGCTCTCCCTCTAACACAGGGACGGATAATGCTGTCATCAGTACTGCGCCTGGGGCTGGTGAAGAAAGACGGCGTAAGAATGGTGCCGTGGCTTTGCAGTGTGCGTATTGTGGTGAGCGCACGCGCAGCCGCGCGGAGCTGGAGGCGCACACGCGCGCGCACTCCGGCGCGGCGGCCGCGCGACACAAGTGCCTCATCTGCGACGAAGTGTTGCCCTCCGCTGCCGTACTTGCCGAGCATAAGCTCACTCATTGCaagGTAGTGGCGGGGGACACTTGCTCACGCTGTCGTGCACGTCTGTCGTCTGAGGAGTCCTACCTGAATCACATGGCGCGTCACCACCCTGCTCTGCCTGCACCATGTGTAGTTTGCCGACAAACCCTCGCCTCAGAGGCGGAAGCACGCCTGCACGCGCGGTTCCACTTGCGCCCCAGCGAGGATGAGCAGCGATGTGCTATATGCCTCAGGGCGCTACCCGAGAGCGAGGGGGGTGACGGCGCGCGGGCTTGCTCAGCATGCTACGCGCGACACGCAGCACCTCGCCCGCCGCCTCCAGCTGACCACGACTGCAGGCTCTGCCGCCGTGCTCTAGGCTCACCGACAAGACTTCAAGCACATCTCATCGAACATACATTTGCTGGCATCGGAGCTTTCACCTGTTACttgtgttcagcagtttttacaagcgcAGCTGGACTGCAGCGACATTTGCCTGAACATGCTTCCGCGCCACGACCGTATGACTGTGGACGATGTGGTTTGAAGTTCTTTTTCCGAGCTGAGTTAGACAATCATGCTTTCGTTCATTTGGAGGAAGCGGAGATAGCTCAACGAGCGTTCTACGAAGCGTATGCTAGAGGAGCAGCTACAGCATGGGCAGCTCTTGCACCGCAGGAGGTTCCAGCGGCAGTGGCTACGCCGGCTCCGCCTCCTCCCGAGGTAAAGCATGAACCCGAGATAAAGGAAGAGCGTAATGAGGAATATATTGAAGTATCGTCACCCCCTCCCCCTGCGCCCTCGCCGCAGCCGCCCCCCGCCACAGAAGCCTCACCGTCGTTGGTGAAACAAGAGAAGCCCGACGAAGACTGA
Protein Sequence: MIMLFKGNSSRLEHLIEKIQANKENHDAISEDIKEALGSVGSTAASSWPSSTPEPSPSPASTPTSADAADGEPEPPFTLGATEHTPYQCQFCDKAFPRLSYLKKHEQDYLCGIAVTVALVEISIDACTSRRPTSAAGCGRRSTPATSGCAPTNVSDDDRVPFATRNRDRALTAGNRRSHVVEICYKVNRNICVPLNHKLCSASWWEQHAADQQDSAMHPAARPPQRDAYTSRLKFSNYPRCRQKFKFTHSDQMPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCSHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKRDREGRETERRRPIRCLRCGEVFRHPDLLQTHMASVHGVDSAALTPPQRVASQPPPTLLACIYCTRDTFTSMEQLQLHVRTAHSALLNGESPIQGVDQPAPTDLSKRATDDGPVVKRSRSGSDTPQTTLSHSTLLCNQCDAALPDFEAFRTHLKAHIEEGSELTRASPAPCVHCGSTFADAAASERYLTSHYLAVSCEYSCHSCARSFSAPDDLQKHLFDLHAHHLYRCSLCKEIFDSKVAIQVHFAVAHSGENKVWVCRSCGASTGSMRSEAEGAAHVRARHAAGAARCACGALLAGVRRARHTRPYRCPVPPCTDTFAVQYLLERHMQMHHTIPHQVLNGDIARGKRIENNNGGEGVDEACSPSNTGTDNAVISTAPGAGEERRRKNGAVALQCAYCGERTRSRAELEAHTRAHSGAAAARHKCLICDEVLPSAAVLAEHKLTHCKVVAGDTCSRCRARLSSEESYLNHMARHHPALPAPCVVCRQTLASEAEARLHARFHLRPSEDEQRCAICLRALPESEGGDGARACSACYARHAAPRPPPPADHDCRLCRRALGSPTRLQAHLIEHTFAGIGAFTCYLCSAVFTSAAGLQRHLPEHASAPRPYDCGRCGLKFFFRAELDNHAFVHLEEAEIAQRAFYEAYARGAATAWAALAPQEVPAAVATPAPPPPEVKHEPEIKEERNEEYIEVSSPPPPAPSPQPPPATEASPSLVKQEKPDED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00341544;
90% Identity: -
80% Identity: -