Basic Information

Insect: Lapara coniferarum
Gene Symbol: -
Assembly: GCA_949316025.1
Location: OX438932.1:14441394-14449657[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00015 0.013 16.8 3.7 1 20 224 243 224 246 0.94

2 9 1.3e-05 0.0011 20.1 0.9 1 23 252 274 252 274 0.99

3 9 1.9e-06 0.00016 22.8 2.1 1 23 280 302 280 302 0.98

4 9 3.4e-06 0.00028 22.0 0.8 1 23 308 330 308 330 0.98

5 9 3.4e-06 0.00029 22.0 0.2 1 23 336 358 336 358 0.96

6 9 4.6e-07 3.9e-05 24.7 0.8 1 23 364 386 364 386 0.98

7 9 0.00028 0.024 16.0 3.6 1 23 392 414 392 414 0.98

8 9 0.00049 0.041 15.2 1.8 5 23 423 441 420 441 0.94

9 9 2.4e-05 0.002 19.3 5.5 1 23 447 470 447 470 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00015	0.013	16.8	3.7	1	20	224	243	224	246	0.94
2	9	1.3e-05	0.0011	20.1	0.9	1	23	252	274	252	274	0.99
3	9	1.9e-06	0.00016	22.8	2.1	1	23	280	302	280	302	0.98
4	9	3.4e-06	0.00028	22.0	0.8	1	23	308	330	308	330	0.98
5	9	3.4e-06	0.00029	22.0	0.2	1	23	336	358	336	358	0.96
6	9	4.6e-07	3.9e-05	24.7	0.8	1	23	364	386	364	386	0.98
7	9	0.00028	0.024	16.0	3.6	1	23	392	414	392	414	0.98
8	9	0.00049	0.041	15.2	1.8	5	23	423	441	420	441	0.94
9	9	2.4e-05	0.002	19.3	5.5	1	23	447	470	447	470	0.97

Sequence Information

Coding Sequence: ATGTCTACTGATTTGCAATCTAGAAACGTGCCCCTGGACCTTAGCAAAGTGTGTCGAATATGTCTACAGTCAAATAAACCAACATGTGATATATACACAAGTTATTATGTGAAAAGGAACACTCTCTACTGTGAAATGCTAGCTTCCTGTACTAAATTAAAGCTAAACAAAGATGATGGACTTCCAAGACAAATTTGCAAAGAATGTTGCAAGCAGCTCAAACGGACCTATGCATTCAATTTACAATGTGAAGAGAGTGACAAGGAATTAAAAGGATATATCTTTAAAGATGAgtttaaaaacagtaacataaagattgTGAAAGAAGAAACAATACACAATACGGAACTTGATTCGTCTACCATTGATGTCAAAAATGATATTAAAGTTGagCCTTCATACAATGACGGTAATGACAGCTGTTGGGATGCAGATGATGACAATCTTCTTCTAGAGGATATCAAATCTACGAAGACGCTTGATGAATCATCTTTAAACAATGATATTAAAAATGGCATAGTCACGGATGGATTGCTTCTAGACAATATTGAAGTTAAAAACAAGACTAAAGCATCACAATTAAATGAATCAAAACCTAAAGGAAAGAGGGGGAGAAAGAAAAAAGTCCTATTGAATGGAGAGCCAGCACTGCCGGAAAGCAAACTGCCACACCAGTGCGACGTTTGCGGCAAGTTCCTGAGCACCAAGAGTAATCTGAAGGCGCACAAGATATGTCACACGGATATACGGCCGTACAAGTGTCCCGATTGTCCGGCATCTTTTAGGGGTCACAGCGCACTGTTCCAACACAAGAAGGTGCACACTGGTGAAACTCCATACCACTGTGAGTACTGTCCGAAGCAGTTCAGCAGACGCACTGGACTCGTCAACCATATACGAATGCATATAGGTGAGAAGCTGTACAGCTGTGACATCTGCTTCAAGAATTTTGTGCAGAGCGCTCAATTATCAATACACATGAAGCGGCATAAGGGTGACAAGCCATATCTCTGTCAGGATTGTGGGAAACGTTTCCCGATAAAAGCGGACCTGCGCGTCCACCAGCGCATCCACAACGGCGAGAAGCCGTACAGCTGCCATCTCTGCACCAAGACCTTCGCCACCGCCGGCAACCTCTCCATACACATACGCATACACAACAAGGAAGTCAGATACAACTGCGAAGTGTGTCATCGCGGTTTCGTAACATGCAGTGCATATAACGTCCATCTGAAGCGGCACAAAGGGCAGAGAGACCATCGTTGTGAGTGTGGCAAGACGTTCTACACCTCATCCGCCCTCAAACAACATAGAGTCGTCCACACCGGCGAAAAGAAATATCAATGCAAAATATGTGAAAGGAAATTCACACAAACTAGTCATTTAAGTCGTCATTTCAAAAGGGACCATGCAAAGCCGAACATGCCGGTGCCTTCGTCCGATCATTATAAAGTTGTACTGCAAGGTAACAAAGTGTTCGGgttaatagatggcgcttttCCGAAATTGACAGTGACAGCCGATTCAAACGTCAAATGCGAGGCTTCATAG
Protein Sequence: MSTDLQSRNVPLDLSKVCRICLQSNKPTCDIYTSYYVKRNTLYCEMLASCTKLKLNKDDGLPRQICKECCKQLKRTYAFNLQCEESDKELKGYIFKDEFKNSNIKIVKEETIHNTELDSSTIDVKNDIKVEPSYNDGNDSCWDADDDNLLLEDIKSTKTLDESSLNNDIKNGIVTDGLLLDNIEVKNKTKASQLNESKPKGKRGRKKKVLLNGEPALPESKLPHQCDVCGKFLSTKSNLKAHKICHTDIRPYKCPDCPASFRGHSALFQHKKVHTGETPYHCEYCPKQFSRRTGLVNHIRMHIGEKLYSCDICFKNFVQSAQLSIHMKRHKGDKPYLCQDCGKRFPIKADLRVHQRIHNGEKPYSCHLCTKTFATAGNLSIHIRIHNKEVRYNCEVCHRGFVTCSAYNVHLKRHKGQRDHRCECGKTFYTSSALKQHRVVHTGEKKYQCKICERKFTQTSHLSRHFKRDHAKPNMPVPSSDHYKVVLQGNKVFGLIDGAFPKLTVTADSNVKCEAS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01010622;
90% Identity: iTF_01359087;
80% Identity: -