Lcon024188.2
Basic Information
- Insect
- Lapara coniferarum
- Gene Symbol
- -
- Assembly
- GCA_949316025.1
- Location
- OX438930.1:24059331-24065530[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0076 0.64 11.5 3.5 5 23 4 23 1 23 0.92 2 17 0.0062 0.52 11.7 0.1 1 23 92 114 92 114 0.95 3 17 1.2e-06 0.0001 23.5 0.5 1 23 118 141 118 141 0.92 4 17 0.39 33 6.1 0.3 3 19 148 164 147 167 0.89 5 17 0.01 0.87 11.1 2.4 1 23 174 197 174 197 0.95 6 17 0.033 2.8 9.4 1.2 1 23 204 227 204 227 0.85 7 17 6.7e-05 0.0057 17.9 0.8 1 23 232 254 232 254 0.95 8 17 0.042 3.5 9.1 0.9 1 15 260 274 260 276 0.91 9 17 0.0068 0.58 11.6 4.1 3 23 317 338 313 338 0.88 10 17 0.0062 0.52 11.7 0.1 1 23 407 429 407 429 0.95 11 17 2.2e-06 0.00018 22.6 0.6 1 23 433 456 433 456 0.92 12 17 0.39 33 6.1 0.3 3 19 463 479 462 482 0.89 13 17 0.01 0.87 11.1 2.4 1 23 489 512 489 512 0.95 14 17 0.033 2.8 9.4 1.2 1 23 519 542 519 542 0.85 15 17 2.7e-05 0.0022 19.2 1.1 1 23 547 569 547 569 0.95 16 17 3.2e-07 2.7e-05 25.2 0.8 1 23 575 597 575 597 0.97 17 17 0.00042 0.035 15.4 4.4 1 23 603 625 603 626 0.93
Sequence Information
- Coding Sequence
- ATGTGCATCTACTGCTTCAAGCGATATACGAACACCTCACACTTTAGGCAGCACATGGAAACAGATCACGTAGATTTTAAAGTAAAAACTGCTTTCGCTCATCTCCGCGCTGCTTACATCAAAGCAGACTGCACTGATCTTCGTTGTAAATTATGTTCCGAAACTCATCCAACATTAACGTCCATTGCGCATCACTTGAGCGATGTCCACAAAaagaatttgaatttcgaaggtgacTTGGGAATTCAGCCGTACAAGTTTTTAGATGAGAAATTCCTTTGTGGGATTTGTGACGGTAACTTTCCCGGCCTTCGTCAGCTAAGCAGGCACATGTCATCACACTTCAGAAATTTCACCTGTGAGGAGTGTGGCAAATCATTCCCGACGAAAGGTTCCCTCCAGGTTCATTTGACGTTTTCTCATATTAAAGATGATCGTATATGCAGAAAGTGTAAACAGACATTTTCGTCACTAGAAGCTAAAAAGGAACATGTTGTATCTACGCAAACGTGTTGGTTATATCGATGTAATAGTTGCTCGCAAAGATTCATGACTTGGAAGCACAAAGAACAGCATATGATCGAAATCCACGGAAGGAATGAGAAGACTTTCTCTTGTCCTGAGTGCGGGATGAATTTTGTTTCTAGGTATACACATAGAGTTCATTTCGCGATTAAGCACTCCGGGATCTGCTTTGATTGTTCCGATTGTGGAATGAAGTTCTCCAACCAAAAGGATTTGGATCAACACACCGTAAAGCACACTGGTATTAAGAAATTCAAGTGCGATGTATGTTCCAAAATGTTTCCGAGGAAAAAGGACACCCAGCTCTCGATCAAGAGGAGAAACGAGGCCACTACGCCCTACTCGACTGCACGGAAAAACGCGGCCCTGATACTAGCCAACTCGACCGCGTATCCCTTCCGGCTGCCTGATGTGTGCGTCATGTGCATCTACTGCTTCAAGCGATATACCAACACCTCACACTTTAGGCAGCACATGGAAACAGATCACGTAGATTTTAAAGTAAAAAGTGCTTTCGCTCATCTCCGCGCTGCTTACATCAAAGCAGACTGCACTGATCTTCGTTGTAAATTATGTTCCGAAACTCATCCAACATTAACGTCCATTGCGCATCACTTGAGCGATGTCCACAAAaagaatttgaatttcgaaggtgacTTGGGAATTCAGCCGTACAAGTTTTTAGATGAGAAATTCCTTTGTGGGATTTGTGACGGTAACTTTCCCGGCCTTCGTCAGCTAAGCAGGCACATGTCATCACACTTCAGAAATTTCACTTGTGAGGAGTGTGGCAAATCATTCCCGACGAAAGGTTCCCTCCAGCTTCATTTGACGTTTTCTCATATTAAAGATGATCGTATATGCAGAAAGTGTAAACAGACATTTTCGTCACTAGAAGCTAAAAAGGAACATGTTGTATCTACGCAAACGTGTTGGTTATATCGATGTAATAGTTGCTCGCAAAGATTCATGACTTGGAAGCACAAAGAACAGCATATGATCGAAATCCACGGAAGGAATGAGAAGACTTTCTCTTGTCCTGAGTGCGGGATGAATTTTGTTTCTAGGTATACACATAGAGTTCATTTCGCGATTAAGCACTCCGGGATCTACTTTGATTGTTCCGATTGTGGAAGGAAGTTCTCCAACCAAAAGGAATTGGATCAACACACCGTAAAGCACACTGGTATTAAGAAATTCAAGTGCGATGTATGTTCCAAAATGTTTCCGAGGAAAAGTAACTTGCGGGCACACTTGTACATACATTCCGAATACAAGAGATTTGAATGTGTACCGTGCAAAAAGAAATTCAATCaaaaagttaattatagaaCGCATATGAAGACCCATCATTCTGCCtaa
- Protein Sequence
- MCIYCFKRYTNTSHFRQHMETDHVDFKVKTAFAHLRAAYIKADCTDLRCKLCSETHPTLTSIAHHLSDVHKKNLNFEGDLGIQPYKFLDEKFLCGICDGNFPGLRQLSRHMSSHFRNFTCEECGKSFPTKGSLQVHLTFSHIKDDRICRKCKQTFSSLEAKKEHVVSTQTCWLYRCNSCSQRFMTWKHKEQHMIEIHGRNEKTFSCPECGMNFVSRYTHRVHFAIKHSGICFDCSDCGMKFSNQKDLDQHTVKHTGIKKFKCDVCSKMFPRKKDTQLSIKRRNEATTPYSTARKNAALILANSTAYPFRLPDVCVMCIYCFKRYTNTSHFRQHMETDHVDFKVKSAFAHLRAAYIKADCTDLRCKLCSETHPTLTSIAHHLSDVHKKNLNFEGDLGIQPYKFLDEKFLCGICDGNFPGLRQLSRHMSSHFRNFTCEECGKSFPTKGSLQLHLTFSHIKDDRICRKCKQTFSSLEAKKEHVVSTQTCWLYRCNSCSQRFMTWKHKEQHMIEIHGRNEKTFSCPECGMNFVSRYTHRVHFAIKHSGIYFDCSDCGRKFSNQKELDQHTVKHTGIKKFKCDVCSKMFPRKSNLRAHLYIHSEYKRFECVPCKKKFNQKVNYRTHMKTHHSA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -