Lcon018609.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lapara coniferarum
Gene Symbol
-
Assembly
GCA_949316025.1
Location
OX438927.1:21033520-21046121[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.0089 0.76 11.2 0.0 5 23 101 119 100 119 0.96
2 19 1e-06 8.8e-05 23.6 1.2 1 23 125 147 125 147 0.99
3 19 6.5e-06 0.00054 21.1 2.7 1 23 153 175 153 175 0.99
4 19 4.3e-06 0.00036 21.7 2.6 1 23 190 212 190 212 0.98
5 19 0.00022 0.019 16.3 0.3 1 23 227 249 227 249 0.98
6 19 5.9e-05 0.005 18.1 3.1 1 23 264 286 264 286 0.98
7 19 4.1e-07 3.5e-05 24.9 1.5 1 23 301 323 301 323 0.99
8 19 0.00018 0.015 16.6 2.8 1 23 329 351 329 351 0.98
9 19 0.00023 0.019 16.3 0.0 1 23 358 380 358 380 0.98
10 19 1.3e-05 0.0011 20.2 2.1 1 23 386 408 386 408 0.99
11 19 0.042 3.5 9.1 1.8 1 23 415 437 415 437 0.98
12 19 7e-07 5.9e-05 24.2 2.3 1 23 443 465 443 465 0.99
13 19 0.048 4.1 8.9 1.8 1 23 472 494 472 494 0.98
14 19 2.8e-06 0.00024 22.3 1.5 1 23 500 522 500 522 0.99
15 19 0.00054 0.046 15.1 0.7 1 23 529 551 529 551 0.99
16 19 2.8e-06 0.00024 22.3 1.8 1 23 557 579 557 579 0.98
17 19 0.0023 0.19 13.1 0.3 1 20 585 604 585 607 0.93
18 19 4.4e-05 0.0037 18.5 1.4 2 23 614 635 613 635 0.96
19 19 3.4e-06 0.00029 22.0 1.3 1 23 641 664 641 664 0.97

Sequence Information

Coding Sequence
ATGCGCGGAACGTCGCCGCGCATGCGCACGGCGCAGACATCGCTGCGCCGAGCCACGCGCGCTCTGATTGGCCGAGCGCTGCGACGGCCGCAGCGCACCCGCTTCCCGATGCCAGCCTGGGGACACAATAAGAATAGGCCCAAATCCCCGGTCGGCAGCCAGTTCGAGCGAGGACTCCGAGGAAGAAAAAGGAAGAaaactggaagaacactggaagaacactggaagaactctggaagaactctggaagaactcaggaagaactctggaaggaagcaagaaaaacgtacacggtccgcggtttGTGGCAAAGTACTATCGTCCGCGTCATCCTATTACGTCCACATGAAACTCCATTCAGGAAATAAACCTTTCCAATGCACGgtgtgcGACGCGGCATTTTGTCGCAAACCGTACTTGGAAGTGCACATGCGCACGCACACAGGGGAGCGCCCTTTTCAATGCGATCTCTGCCTGAAGCGATTCACACAAAAATCAAGTCTCAATACGCACAAACGCGTCCACACAGATGAGCACATGCGGGCGTTGATGGTGAAGGACCGGCCCTACAAGTGTGAGCTCTGTCAGATGCGGTTCACGCAGAGCTCCAGCCTCAACCGACACAAGAAAATACACACGGAGGAACACAAACGTGCGCTGCAGGCTAAGGAACGGCCCTACCAGTGCGGCATCTGCCTTGTGAGATTCACCCAGAAATCGAGTTTGGGCCGGCACGGAAAAATACACACCGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGACGTCATGGGAAAATACATACTGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAATGTGACATCTGTGACAAGCGGTTCACGCAGAAGTCCAGCCTTGGCACTCATAAACGTATACACACCGGGGAGCGGCCGTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAGATACATACGGTGCAAGGGCGTCCTTACGCGTGCGGGCTCTGCCCCGCGGCCTTCGCACGCCGCCCCTACCTGGACATTCACATGCGCACGCATACAGGCGAGCGGCCCTATCAGTGCGACGCGTGTCTCAAGCGCTTCACACAGAAGTCCAGCCTCAATATACATAAGAGGACGCACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGCCCCGCCGCCTTCACCTGCAAGCAATACTTGGAGATTCACACGCGCACCCACACCGGCGAGCGACCCTATCAGTGCGACATCTGTCTCAAGCGCTTCACTCAAAAATCCAGTCTCAACATACACAAGCGGACGCACTCAGTGCAGGGGCGGCCCTTCCAGTGTCTGCAGTGCCCTGCCGCCTTCACCTGCAAGCAGTACCTCGAGATACACAACCGTACGCACACCGGCGAGCGGCCCTACCAATGTGACGTCTGCCTCAAGAGGTTCGCGCAAAAGTCAACACTCAACATACACAAAAGAACGCACACAGTGCAAGGTCGCCCGTACCAATGCATGGAGTGTCCGGCGGCGTTCACATGCAAGCCGTACCTGGAGATACACATGCGCACGCACACCGGCGAACGACCGTTCGAGTGCGATGTCTGTTACAAACGCTTCTCGCAGAAATCCACGCTCAACATTCACAAACGCATTCATACCGGAGAACGTCCATACGCATGTGATATTTGTCAGAAACGCTTTGCTGTAAAGAGCTATGTAACCGCTCACAGATGGTCGCACGTGGCGGACAAGCCGTTGAACTGCGACCGATGCTCGATGACGTTCACGTCCAAGTCTCAGTTCGCGCTGCACATCCGCACGCACTCGGCCGGCTCCTGCTACGAGTGCAGCGTCTGCGGGCGCAGCTTCGTTAGGGATAGCTATTTAATAAGACACCACAACCGCGTCCACCGTGAGAACCACAGCAACGTGTCCGCGAACAGCATCGGCACCCTCAACAGCGTCGCGACCAACACAAACAATTCCAATAGTAACTATGACTCGCCGGGCGTTTGTGACTTAAGctTTGTGCCAATGGTGAATCGTTACATGACATCACAAGGTACCCAGGTGTCCATGCAAGACACTCAGAGCAAAATGTCAGCGATGTCGCCGCAATCCATTGCGTCTATTTCATCGCCTCCCCCTTCACACACCCCCACGCCCCAACCCCAGATGTCGGGTCAGATGCATCTCGCAGACTGA
Protein Sequence
MRGTSPRMRTAQTSLRRATRALIGRALRRPQRTRFPMPAWGHNKNRPKSPVGSQFERGLRGRKRKKTGRTLEEHWKNSGRTLEELRKNSGRKQEKRTRSAVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALMVKDRPYKCELCQMRFTQSSSLNRHKKIHTEEHKRALQAKERPYQCGICLVRFTQKSSLGRHGKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTVQGRPYACGLCPAAFARRPYLDIHMRTHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFSQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMTFTSKSQFALHIRTHSAGSCYECSVCGRSFVRDSYLIRHHNRVHRENHSNVSANSIGTLNSVATNTNNSNSNYDSPGVCDLSFVPMVNRYMTSQGTQVSMQDTQSKMSAMSPQSIASISSPPPSHTPTPQPQMSGQMHLAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00041088;
90% Identity
iTF_00041088;
80% Identity
-