Lcon007489.1
Basic Information
- Insect
- Lapara coniferarum
- Gene Symbol
- -
- Assembly
- GCA_949316025.1
- Location
- OX438922.1:11345525-11345869[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.6e-08 8.7e-05 23.0 0.0 2 41 16 56 15 60 0.89 2 2 3.3 5.1e+03 -1.8 0.0 2 9 66 73 66 76 0.88
Sequence Information
- Coding Sequence
- ATGCCTGGCAATTACAAACGAACATCGACGCGAAAATGTTGGTCACAAGAAGACATGGAAGAGGCCATTAAAGCTGTAAAAGACAACAGAATGGGTTGGCTTTTGGCATCTAAACATTTTAACGTCCCTCAAGCAACTCTTCGTTGTCATTTTTATCGTACTCCGGTAAATCTCGGTCGTGTTAAACCCACCTTCAACGAAGATATGGAAAAAGCATTAGTGGATCATATTCTAGAGTTTGAAAGTCGACTTTTTGGATTTAACACTACCGAAATAAGACAATTAGCTTTTCAATATGCGGAAAGGTTGGGACTGAATCAcagatttgataaaaataagaaatag
- Protein Sequence
- MPGNYKRTSTRKCWSQEDMEEAIKAVKDNRMGWLLASKHFNVPQATLRCHFYRTPVNLGRVKPTFNEDMEKALVDHILEFESRLFGFNTTEIRQLAFQYAERLGLNHRFDKNKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00758090;
- 90% Identity
- -
- 80% Identity
- -