Lcon021078.1
Basic Information
- Insect
- Lapara coniferarum
- Gene Symbol
- -
- Assembly
- GCA_949316025.1
- Location
- OX438929.1:4429677-4431783[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.8e-05 0.11 13.2 0.1 17 39 1 23 1 27 0.94 2 2 2.8e-12 4.3e-09 36.8 0.1 1 37 60 96 60 104 0.89
Sequence Information
- Coding Sequence
- ATGTCACAACGCGCAGCAGGGATTCGTCATAAAATTCCGAAAAGAACTCTACGGCAACACTTCCAAACAGtgGCAAAGGTACCGTCAAAGCGCGGGAAACAATGGTTCCGAATAAAACCtatttctactgttttattCTCTGATTCAATTAAATTGCCTTCGAAACGAGCTGCGTGGTCCGAAGAAAGTCTCCAAGCAGCCATGGAGGCCATAAAAGAAGGCAAAATGTCACAATACGCTGCAGCagagttttataatattccaAGAACGACATTGCGGGATCATTTGATATCAGGAAGTACCATAAAGAGAACTGGACGCTATCCAACCCTGAATTCGGAGCAAGAAAAGGATCTCGTGAGCAGGCTAAGAGTCAAAAACAAGAGATTGAAATTAACATCTGAAATGATATGTAGGGAAGCATTTATTTTTTGCGAGGAACACAAATTGAAACACAATTTCAACAAAAAAGCCGGTCTGGCGGGCAAAGACTGGCTAAAACCATTTTTGGAGCGACATCCTGAAATTTCCATCGTACATAACCAACACTTTCCATCTTCGACCCCTCGAACTTAG
- Protein Sequence
- MSQRAAGIRHKIPKRTLRQHFQTVAKVPSKRGKQWFRIKPISTVLFSDSIKLPSKRAAWSEESLQAAMEAIKEGKMSQYAAAEFYNIPRTTLRDHLISGSTIKRTGRYPTLNSEQEKDLVSRLRVKNKRLKLTSEMICREAFIFCEEHKLKHNFNKKAGLAGKDWLKPFLERHPEISIVHNQHFPSSTPRT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -