Lcon018410.1
Basic Information
- Insect
- Lapara coniferarum
- Gene Symbol
- lov
- Assembly
- GCA_949316025.1
- Location
- OX438927.1:17793980-17795042[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.1e-18 1.6e-15 57.4 0.0 1 44 70 113 70 114 0.96
Sequence Information
- Coding Sequence
- atgagCGGAGGCGAGGCGACGTCGCGAGCGCGGCGCATGCATGTGCGCGTTCTTTTTGACAAACGGCCCGTAATAGTCGCGTGCTCGCTACGAATTAATGACGAATCGCCGCCGACGAAATGTCGTCGCAACCCGCTCATTTCGTCGTGTGTCGGGAGACCGAAAGGTCAACACAGCGCGCCGCGCGGCGGTCCACCTCGATCATGGACGAACGCCGAGCTGACGGAGGCGCTCCAGCACGTGTGGAACAAGAAGATGACCACCAGCCAGGCGTCACGGATATTCGGCATCCCGTACAACTCGCTGCTCATGTACGTGCGAGGCAAGTACGGCAAGAGCCTCAAGCTTGAACAACTGAGGAAGGACTGCATCGGCGCGCCGCTCGATGTACTCAACCTCAACTCCggtaacaacaacaacaaccaTCCCGCAAGCAAACACCACGACAAGGAGGATCACCAGAACGCGAGCCAAAGACCGGCCAGCTCCGAGCCGGACATCCCTTCGAACCCGATGTTCAATCCGTTCCAGCAAGGGTTCTACCCGGAGTTCCCGCCTGGCTTCCCGATGCCACTCAACATGCTGCACCTGCTTCCGCCCAACGATAAGGCGCGGGAGCTGTACCAGTCGATGCCGATGGCGCTGGACGCGCTGTCAGGCGTCACTAAGGAGGAGGACTGCAAGAGTGACCGCTCCAAGGAGAACTCTGCGGACGAGGAGGGCGAGTACCGCGCGCCGCTGCCCCCGCACCCCCCGCACCCGCCCGACGCCCGCACACTGCTGCACCACAACGGACAGGACTAA
- Protein Sequence
- MSGGEATSRARRMHVRVLFDKRPVIVACSLRINDESPPTKCRRNPLISSCVGRPKGQHSAPRGGPPRSWTNAELTEALQHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLRKDCIGAPLDVLNLNSGNNNNNHPASKHHDKEDHQNASQRPASSEPDIPSNPMFNPFQQGFYPEFPPGFPMPLNMLHLLPPNDKARELYQSMPMALDALSGVTKEEDCKSDRSKENSADEEGEYRAPLPPHPPHPPDARTLLHHNGQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00651653;
- 90% Identity
- iTF_01358805;
- 80% Identity
- -