Lpop029370.1
Basic Information
- Insect
- Laothoe populi
- Gene Symbol
- nfxl1
- Assembly
- GCA_905220505.1
- Location
- HG992171.1:1158856-1182481[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 41 0.014 5e+02 1.8 0.3 4 10 169 175 168 176 0.97 2 41 4.2e-07 0.015 16.3 15.9 3 19 186 202 185 202 0.95 3 41 5.7e-07 0.021 15.8 13.0 3 19 239 255 237 255 0.92 4 41 6.4e-10 2.3e-05 25.3 11.7 1 19 290 308 290 308 0.99 5 41 3.1e-06 0.11 13.5 18.3 3 19 345 361 337 361 0.88 6 41 0.27 9.8e+03 -2.3 0.8 1 5 370 374 370 379 0.79 7 41 1.6e-06 0.057 14.4 16.0 1 18 395 412 395 413 0.97 8 41 1.1e-08 0.0004 21.3 16.9 1 19 422 440 422 440 0.99 9 41 0.00028 9.9 7.3 6.4 9 19 488 498 486 498 0.89 10 41 0.00076 27 5.9 6.5 1 12 508 518 508 518 0.96 11 41 0.41 1.5e+04 -2.9 3.5 14 18 547 551 547 552 0.87 12 41 0.61 2.2e+04 -3.4 0.6 7 11 567 571 567 571 0.85 13 41 4.1e-06 0.15 13.1 4.1 1 11 588 598 588 599 0.97 14 41 1 3.6e+04 -4.1 1.5 15 18 610 613 609 614 0.82 15 41 0.00043 15 6.7 13.9 4 18 627 642 625 643 0.86 16 41 4e-06 0.14 13.2 14.2 1 18 684 702 684 703 0.91 17 41 0.61 2.2e+04 -3.4 0.6 7 11 834 838 834 838 0.85 18 41 4.1e-06 0.15 13.1 4.1 1 11 855 865 855 866 0.97 19 41 1 3.6e+04 -4.1 1.5 15 18 877 880 876 881 0.82 20 41 0.00043 15 6.7 13.9 4 18 894 909 892 910 0.86 21 41 4e-06 0.14 13.2 14.2 1 18 951 969 951 970 0.91 22 41 0.61 2.2e+04 -3.4 0.6 7 11 1101 1105 1101 1105 0.85 23 41 4.1e-06 0.15 13.1 4.1 1 11 1122 1132 1122 1133 0.97 24 41 1 3.6e+04 -5.6 3.4 15 18 1144 1147 1143 1151 0.65 25 41 0.00043 15 6.7 13.9 4 18 1161 1176 1159 1177 0.86 26 41 4e-06 0.14 13.2 14.2 1 18 1218 1236 1218 1237 0.91 27 41 0.61 2.2e+04 -3.4 0.6 7 11 1345 1349 1345 1349 0.85 28 41 4.1e-06 0.15 13.1 4.1 1 11 1366 1376 1366 1377 0.97 29 41 1 3.6e+04 -4.1 1.5 15 18 1388 1391 1387 1392 0.82 30 41 0.00043 15 6.7 13.9 4 18 1405 1420 1403 1421 0.86 31 41 4e-06 0.14 13.2 14.2 1 18 1462 1480 1462 1481 0.91 32 41 0.61 2.2e+04 -3.4 0.6 7 11 1589 1593 1589 1593 0.85 33 41 4.1e-06 0.15 13.1 4.1 1 11 1610 1620 1610 1621 0.97 34 41 1 3.6e+04 -4.1 1.5 15 18 1632 1635 1631 1636 0.82 35 41 0.00043 15 6.7 13.9 4 18 1649 1664 1647 1665 0.86 36 41 4e-06 0.14 13.2 14.2 1 18 1706 1724 1706 1725 0.91 37 41 0.61 2.2e+04 -3.4 0.6 7 11 1833 1837 1833 1837 0.85 38 41 4.1e-06 0.15 13.1 4.1 1 11 1854 1864 1854 1865 0.97 39 41 1 3.6e+04 -4.1 1.5 15 18 1876 1879 1875 1880 0.82 40 41 0.00043 15 6.7 13.9 4 18 1893 1908 1891 1909 0.86 41 41 4e-06 0.14 13.2 14.2 1 18 1950 1968 1950 1969 0.91
Sequence Information
- Coding Sequence
- ATGGCTAGAAGATATAGGGATGCTGCTGCAAAACTGCAGCAAAATGTACAAAAACATTTGCAGGAAATGAAAGAGCTGTCTTCGTCCGAGGATGAAGAGCCATTTGAAGCGAGCGTGTTGGAAGGCGTCTTTCAAAGCTACTGGTCGCGTGGCGGTGACTCTCAGATGCTGAATAGGACCAAGAACGTTCTAGAAGAAGCTATTAATGGTCGCTCAATTACTTGCCTAATATGCATAGGTTCCATCAAAAGAGCTGACGCGATATGGAGTTGCGGCCACTGTTTCTGCTATTTTCATCTATCTTGCATTCAAAAATGGGCGAACGACAGTATCAGTTTACGCAACGAGGTAAACCAGGGGCCTGTGACACTGTTTGTACCTAAAAAAATCGAGTGGTATTGCCCGAAGTGTAGACATTCGTATTCCAAAGACGAAATCCCACGAAAATACAGATGTTTTTGTGAGAAAACTGATGACCCACCCTACCATGCCTGGTTGATACCACACACTTGTGGTGAGGTGTGTGGCAAAAGGTTGTCAGCCGGAGATAGCTGTAAACATAAATGCCTGCTCCTTTGTCACCCGGGGCCATGCCCTCCTTGTCCTCAAACAGTTGATCGAATCTGCTTCTGTGAGAAAGAGCGTAAGAGAGTTAGGTGTAGTGCTGCAAAATGGTCTTGTGGGCAACGCTGCAAGAAAACATTGCTATGTCGCACCCACAAGTGTGAAAGTGAATGTCATGAAGGTGATTGTTCACCTTGCAGCTACACAAGTGTACAGCCTTGTCAGTGTGGCACTGAGAAGGCAAAACGCCCCTGCAATGACCCAGTCTGGTACTGTAAAAAaccttgtaataaaatatacccATGTGGATATCACAAATGTGAGAGAGTCTGCCATTCCGGAGCTTGTGGAGCATGCCCTAATTCAGGTACAAAGTTTTGTCCGTGCggtgcaaataaaaaatatgtccagtGTCCAGATACTATGGAGACATGTTTAGGTACTTGTGGAAAATTGCATGATGATTGCGATCACAATTGCCCAGAGAAATGCCACAGAGGTCCCTGCCCACCCTGTCAAGTACTAGTCCAGAAGAAATGTTATTGCGGCACACATACCAGATCTCTACCATGCAGTAAAGAGTTCAAATGTGAAACTAAATGTAGAGGCATAAGACCCTGTGGTAAACATAGCTGTGCTCGCAAATGTTGCAATGGAAACTGTCCTACATGTGAAAAAATCTGTGACAAACCTCTCCAATGTGGTCGACATAAATGCACAAACATTTGCCATCATGGACCCTGTTACCCTTGTCCTTTAGAATCGAAAATTGCCTGCAGGTGTAAAGAAACGTACATCAGAGTACCATGTGGAAGAGAGAAGTCTGTAAAACCACCAAAGTGTTCACTGCCATGCaagattaaatataaatgtggACATGCTGATGAAAATAAGCATTCTTGCCACTTTGGTGACTGTCCACCATGTAAAGCAGTATGCTATAAAACCTATGCAAGATGTGGGCATGACTGCAAAGCCGTATGCCATGAGTATGTAGCTGTTGTATTCAAACAGATAGAAAAGCCCGCTACACCCTGGGAAGTGCAACCCCCAAAGACTAAAATAATGACTTTAGACTGCCCTCCATGTGAGACGCGTGTCTCGGTTATATGTTTGGGTGAACATGAGACAGAAGAGCAACCATGCCATATGGCAACTCGTCGATCTTGTGGGAGAGAATGTGGCCGTCCATTGCCTTGTGGCAACCACACATGTGCTTTATTGTGTCATCTTGTGAGAACTAACGAAAATGTGCCTTCAAGTTGTAGACCTTGTGAAAAGGAATGTATGGTGCCTCGTCCAAAAAAGTGTGTGCACAAATGCTCCATTCGTCAATGTCATCAAGGACCATGTCCACCATGCGATGTGATAGAAAGAATTCCATGTCACTGTGGCGTCACAGAGCTGTATTTACGCTGCCGAGAGCTATCAATAGCAACTGAAGAGAAATTATCATGCCAACAACAGTGCCCTAAAAACTTGGAATGTGGACATCGTTGCCGTAACACATGTCATTCTGGGCCTTGCGGAAATCAAACCTGCACTAGGAAGACTAAAATATACTGCTCATGCTCAAATTTGAAGAAGGAGGCTGCATGTAATCTGGTAAGGAGTGGAACAGCAAAAGTTATCTGTGACAAATCATGTGAAGAGAAGAAAATAACTGCACAAATTGAGAAAGAAAAGGAACAACGACGACAGAAAGAGCTTGAGGAAGAGAGAAATAAAAGGGAGCTTGCAGAGTATGAGTGGAAATTAAGTGGGAAAAAGAAGAAATATAAGGAAAAGAGAGTTGCTGTAAACAAAGATGATAGAAACTGGCTGCAACGTTATTGGATTCCTATTGTATCAATATTGATTGTACTTATTGCAGCTacgtattacatattttatTTAGGTGTCTCGGTTATATGTTTGGGTGAACATGAGACAGAAGAGCAACCATGCCATATGGCAACTCGTCGATCTTGTGGGAGAGAATGTGGCCGTCCATTGCCTTGTGGCAACCACACATGTGCTTTATTGTGTCATCTTGTGAGAACTAACGAAAATGTGCCTTCAAGTTGTAGACCTTGTGAAAAGGAATGTATGGTGCCTCGTCCAAAAAAGTGTGTACACAAATGCTCCATTCGTCAATGTCATCAAGGACCATGTCCACCATGCGATGTGATAGAAAGAATTCCATGTCACTGTGGCGTCACAGAGCTGTATTTACGCTGCCGAGAGCTATCAATAGCAACTGAAGAGAAATTATCATGCCAACAACAATGCCCTAAAAACTTGGAATGTGGACATCGTTGCCGTAACACGTGTCATTCTGGGCCTTGCGGAAATCAAACCTGCACTAGGAAGACTAAAATATACTGCTCATGCTCAAATTTGAAGAAGGAGGCTGCATGTAATCTGGTAAGGAGTGGAACAGCAAAAGTTATCTGTGACAAATCGTGTGAAGAGAAGAAAATAACTGCACAAATTGAGAAAGAAAAGGAACAACGACGACAGAAAGAGCTTGAGGAAGAGAGAAATAAAAGGGAGCTTGCAGAGTATGAGTGGAAATTAAGTGGGAAAAAGAAGAAATATAAGGAAAAGAGAGTTGCTGTAAACAAAGATGATAGAAACTGGCTGCAACGTTATTGGATTCCTATTGTATCAATATTGATTGTACTTATTGCAGCTacgtattacatattttatTTAGGTGTCTCGGTTATATGTTTGGGTGAACATGAGACAGAAGAGCAACCATGCCATATGGCAACTCGTCGATCTTGTGGGAGAGAATGTGGCCGTCCATTGCCTTGTGGCAACCACACATGTGCTTTATTGTGTCATCTTGTGAGAACTAACGAAAATGTGCCTTCAAGTTGTAGACCTTGTGAAAAGAAATGTATGGTGCCTCGTCCAAAAAAGTGTGTACACAAATGCTCCATTCGTCAATGTCATCAAGGACCATGTCCACCATGCGATGTGATAGAAAGAATTCCATGTCACTGTGGCGTCACAGAGCTGTATTTACGCTGCCGAGAGCTATCAATAGCAACTGAAGAGAAATTATCATGCCAACAACAGTGCCCTAAAAACTTGGAATGTGGACATCGTTGCCGTAACACGTGTCATTCTGGGCCTTGCGGAAATCAAACCTGCACTAGGAAGACTAAAATATACTGCTCATGCTCAAATTTGAAGAAGGAGGCTGCATGTAATCTGGTAAGGAGTGGAACAGCAAAAGTTATCTGTGACAAATCGTGTGAAGAGAAGAAAATAACTGCACAAATTCAGAAAGAAAAGGAACAACGACGACAGAAAGAGCTTGAGGAAGAGAGAAATAAAAGGGAGCTTGCAGAGTATGAGTGGAAATTAAGTGGGAAAAAGAAGAAATATAAGGAAAAGAGAGTTGCTGTAAACAAAGATGATAGAAACTGGCTGCAACGTGTCTCGGTTATATGTTTGGGTGAACATGAGACAGAAGAGCAACCATGCCATATGGCAACTCGTCGATCTTGTGGGAGAGAATGTGGCCGTCCATTGCCTTGTGGCAACCACACATGTGCTTTATTGTGTCATCTTGTGAGAACTAACGAAAATGTGCCTTCAAGTTGTAGACCTTGTGAAAAGGAATGTATGGTGCCTCGTCCAAAAAAGTGTGTACACAAATGCTCCATTCGTCAATGTCATCAAGGACCATGTCCACCATGCGATGTGATAGAAAGAATTCCATGTCACTGTGGCGTCACAGAGCTGTATTTACGCTGCCGAGAGCTATCAATAGCAACTGAAGAGAAATTATCATGCCAACAACAGTGCCCTAAAAACTTGGAATGTGGACATCGTTGCCGTAACACGTGTCATTCTGGGCCTTGCGGAAATCAAACCTGCACTAGGAAGACTAAAATATACTGCTCATGCTCAAATTTGAAGAAGGAGGCTGCATGTAATCTGGTAAGGAGTGGAACAGCAAAAGTTATCTGTGACAAATCGTGTGAAGAGAAGAAAATAACTGCACAAATTGAGAAAGAAAAGGAACAACGACGACAGAAAGAGCTTGAGGAAGAGAGAAATAAAAGGGAGCTTGCAGAGTATGAGTGGAAATTAAGTGGGAAAAAGAAGAAATATAAGGAAAAGAGAGTTGCTGTAAACAAAGATGATAGAAACTGGCTGCAACGTGTCTCGGTTATATGTTTGGGTGAACATGAGACAGAAGAGCAACCATGCCATATGGCAACTCGTCGATCTTGTGGGAGAGAATGTGGCCGTCCATTGCCTTGTGGCAACCACACATGTGCTTTATTGTGTCATCTTGTGAGAACTAACGAAAATGTGCCTTCAAGTTGTAGACCTTGTGAAAAGGAATGTATGGTGCCTCGTCCAAAAAAGTGTGTACACAAATGCTCCATTCGTCAATGTCATCAAGGACCATGTCCACCATGCGATGTGATAGAAAGAATTCCATGTCACTGTGGCGTCACAGAGCTGTATTTACGCTGCCGAGAGCTATCAATAGCAACTGAAGAGAAATTATCATGCCAACAACAGTGCCCTAAAAACTTGGAATGTGGACATCGTTGCCGTAACACGTGTCATTCTGGGCCTTGCGGAAATCAAACCTGCACTAGGAAGACTAAAATATACTGCTCATGCTCAAATTTGAAGAAGGAGGCTGCATGTAATCTGGTAAGGAGTGGAACAGCAAAAGTTATCTGTGACAAATCGTGTGAAGAGAAGAAAATAACTGCACAAATTGAGAAAGAAAAGGAACAACGACGACAGAAAGAGCTTGAGGAAGAGAGAAATAAAAGGGAGCTTGCAGAGTATGAGTGGAAATTAAGTGGGAAAAAGAAGAAATATAAGGAAAAGAGAGTTGCTGTAAACAAAGATGATAGAAACTGGCTGCAACGTGTCTCGGTTATATGTTTGGGTGAACATGAGACAGAAGAGCAACCATGCCATATGGCAACTCGTCGATCTTGTGGGAGAGAATGTGGCCGTCCATTGCCTTGTGGCAACCACACATGTGCTTTATTGTGTCATCTTGTGAGAACTAACGAAAATGTGCCTTCAAGTTGTAGACCTTGTGAAAAGGAATGTATGGTGCCTCGTCCAAAAAAGTGTGTACACAAATGCTCCATTCGTCAATGTCATCAAGGACCATGTCCACCATGCGATGTGATAGAAAGAATTCCATGTCACTGTGGCGTCACAGAGCTGTATTTACGCTGCCGAGAGCTATCAATAGCAACTGAAGAGAAATTATCATGCCAACAACAGTGCCCTAAAAACTTGGAATGTGGACATCGTTGCCGTAACACGTGTCATTCTGGGCCTTGCGGAAATCAAACCTGCACTAGGAAGACTAAAATATACTGCTCATGCTCAAATTTGAAGAAGGAGGCTGCATGTAATCTGGTAAGGAGTGGAACAGCAAAAGTTATCTGTGACAAATCGTGTGAAGAGAAGAAAATAACTGCACAAATTGAGAAAGAAAAGGAACAACGACGACAGAAAGAGCTTGAGGAAGAGAGAAATAAAAGGGAGCTTGCAGAGTATGAGTGGAAATTAAGTGGGAAAAAGAAGAAATATAAGGAAAAGAGAGTTGCTGTAAACAAAGATGATAGAAACTGGCTGCAACGTTATTGGATTCCTATTGTATCAATATTGATTGTACTTATTGCAGCTacgtattacatattttatgtatga
- Protein Sequence
- MARRYRDAAAKLQQNVQKHLQEMKELSSSEDEEPFEASVLEGVFQSYWSRGGDSQMLNRTKNVLEEAINGRSITCLICIGSIKRADAIWSCGHCFCYFHLSCIQKWANDSISLRNEVNQGPVTLFVPKKIEWYCPKCRHSYSKDEIPRKYRCFCEKTDDPPYHAWLIPHTCGEVCGKRLSAGDSCKHKCLLLCHPGPCPPCPQTVDRICFCEKERKRVRCSAAKWSCGQRCKKTLLCRTHKCESECHEGDCSPCSYTSVQPCQCGTEKAKRPCNDPVWYCKKPCNKIYPCGYHKCERVCHSGACGACPNSGTKFCPCGANKKYVQCPDTMETCLGTCGKLHDDCDHNCPEKCHRGPCPPCQVLVQKKCYCGTHTRSLPCSKEFKCETKCRGIRPCGKHSCARKCCNGNCPTCEKICDKPLQCGRHKCTNICHHGPCYPCPLESKIACRCKETYIRVPCGREKSVKPPKCSLPCKIKYKCGHADENKHSCHFGDCPPCKAVCYKTYARCGHDCKAVCHEYVAVVFKQIEKPATPWEVQPPKTKIMTLDCPPCETRVSVICLGEHETEEQPCHMATRRSCGRECGRPLPCGNHTCALLCHLVRTNENVPSSCRPCEKECMVPRPKKCVHKCSIRQCHQGPCPPCDVIERIPCHCGVTELYLRCRELSIATEEKLSCQQQCPKNLECGHRCRNTCHSGPCGNQTCTRKTKIYCSCSNLKKEAACNLVRSGTAKVICDKSCEEKKITAQIEKEKEQRRQKELEEERNKRELAEYEWKLSGKKKKYKEKRVAVNKDDRNWLQRYWIPIVSILIVLIAATYYIFYLGVSVICLGEHETEEQPCHMATRRSCGRECGRPLPCGNHTCALLCHLVRTNENVPSSCRPCEKECMVPRPKKCVHKCSIRQCHQGPCPPCDVIERIPCHCGVTELYLRCRELSIATEEKLSCQQQCPKNLECGHRCRNTCHSGPCGNQTCTRKTKIYCSCSNLKKEAACNLVRSGTAKVICDKSCEEKKITAQIEKEKEQRRQKELEEERNKRELAEYEWKLSGKKKKYKEKRVAVNKDDRNWLQRYWIPIVSILIVLIAATYYIFYLGVSVICLGEHETEEQPCHMATRRSCGRECGRPLPCGNHTCALLCHLVRTNENVPSSCRPCEKKCMVPRPKKCVHKCSIRQCHQGPCPPCDVIERIPCHCGVTELYLRCRELSIATEEKLSCQQQCPKNLECGHRCRNTCHSGPCGNQTCTRKTKIYCSCSNLKKEAACNLVRSGTAKVICDKSCEEKKITAQIQKEKEQRRQKELEEERNKRELAEYEWKLSGKKKKYKEKRVAVNKDDRNWLQRVSVICLGEHETEEQPCHMATRRSCGRECGRPLPCGNHTCALLCHLVRTNENVPSSCRPCEKECMVPRPKKCVHKCSIRQCHQGPCPPCDVIERIPCHCGVTELYLRCRELSIATEEKLSCQQQCPKNLECGHRCRNTCHSGPCGNQTCTRKTKIYCSCSNLKKEAACNLVRSGTAKVICDKSCEEKKITAQIEKEKEQRRQKELEEERNKRELAEYEWKLSGKKKKYKEKRVAVNKDDRNWLQRVSVICLGEHETEEQPCHMATRRSCGRECGRPLPCGNHTCALLCHLVRTNENVPSSCRPCEKECMVPRPKKCVHKCSIRQCHQGPCPPCDVIERIPCHCGVTELYLRCRELSIATEEKLSCQQQCPKNLECGHRCRNTCHSGPCGNQTCTRKTKIYCSCSNLKKEAACNLVRSGTAKVICDKSCEEKKITAQIEKEKEQRRQKELEEERNKRELAEYEWKLSGKKKKYKEKRVAVNKDDRNWLQRVSVICLGEHETEEQPCHMATRRSCGRECGRPLPCGNHTCALLCHLVRTNENVPSSCRPCEKECMVPRPKKCVHKCSIRQCHQGPCPPCDVIERIPCHCGVTELYLRCRELSIATEEKLSCQQQCPKNLECGHRCRNTCHSGPCGNQTCTRKTKIYCSCSNLKKEAACNLVRSGTAKVICDKSCEEKKITAQIEKEKEQRRQKELEEERNKRELAEYEWKLSGKKKKYKEKRVAVNKDDRNWLQRYWIPIVSILIVLIAATYYIFYV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -