Lpop031704.1
Basic Information
- Insect
- Laothoe populi
- Gene Symbol
- -
- Assembly
- GCA_905220505.1
- Location
- HG992174.1:6485146-6498866[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0031 0.3 12.6 1.0 1 23 61 83 61 83 0.98 2 11 0.0037 0.35 12.4 8.4 1 23 90 112 90 113 0.93 3 11 0.42 40 5.9 2.0 1 23 117 139 117 139 0.97 4 11 0.48 45 5.7 3.6 1 23 144 167 144 167 0.97 5 11 0.012 1.1 10.8 0.2 1 23 171 194 171 194 0.92 6 11 3 2.8e+02 3.2 0.5 3 21 208 226 207 231 0.88 7 11 1.2 1.1e+02 4.5 0.2 2 23 280 302 279 302 0.94 8 11 0.0075 0.71 11.4 1.5 2 20 318 336 317 339 0.91 9 11 3.3e-05 0.0031 18.8 1.3 1 23 345 367 345 367 0.99 10 11 4.5e-05 0.0042 18.4 3.2 3 23 376 396 374 396 0.97 11 11 2.2e-05 0.0021 19.4 1.3 1 23 402 425 402 425 0.95
Sequence Information
- Coding Sequence
- ATGAATGTATATTCACAGATAAAACGCGACCCAACTGAGCCGAAAGTCGACCGTCGTCGCAAACCGTTCCTCAACGGGGACCTCAACGAGACCCTGTTCACAATAACAGACCTTACGCACGAGGAGCAGTTGGCCGAGATAGACAAGCGTCGGGAATCTGCTAACTACAAGAATGCGGTGTTTAAATGTACGGAGTGTTACAAGGGGTTTCTTGACGAGGACGCGTACAATACACATATGACGAGGCACACCGATAAATGCGGCGAGCACGCGTGCGAGATATGCAAGACCCATTTCAAACATCCGCACGCGTTACGGAAGCATATAACGGCGCATCACACGCAGCGGTTCAGCTGCAACCAGTGCGTGTATGTGACGACGCACAGACAGACAGCGAGGCTGCACGAGAGATGGCACAAGGGCACCAAGTACCACTGTCCGCACTGCCAGGACGAGTTCGTTAAATTCACAACCTACATGGGTCATATACGCATCAAGCACCCCTCAGACTTTGTTTGCGAGCTGTGCGGCTACTCCTTCGTCAGTATCAAAGGCATAGAGCTTCATAAGAAGTTGAAACATCGACTGGAAGATGGACAGGTACCAGAAGACGGCCCGTTCTGCGAGCTTTGTAACGTGAGGTTCGTGTCTATGGAGGCCCATAGACGACATCTGAATGTCTCAGCCAGGCATAGCGCAGGTCGGGAAGCGAACAAACCCAAAGGCAGGAAGTCAAAAGAGACGATGGAGAGAGAGAAGAGAGAGCGAGAGAAGAATAGAGAGCCGGAATCGAAGAGGCGATACCCGAGTCAGGTCAGAAAGGCGGAGGGTCCTATACCTTGCGAACAGTGTGGAGTTCAGTTGGAAGACTCGAGGGCGTACCACGGCCACTTCCGGAAGGTGCACCCGGACAAGAATCGAACCAAGTACCCGTCGATGAAGTCGCCGTGTATGTGCGAAGTTTGCGGCAGGATGTTCCagAGTCACGCCCTGCTGAAGGACCACAGATGGGTGCACACCGGCGAGAGGCCGTTCCAGTGCGACTCGTGCGACAAGTCGTTCCGGATGAAGCAGCGGCTCGTGGCGCACCGCAGGGTGCACAGCCAGGTGAAGGCCTCGTACGGATGCACGCTGTGCGGGAAGAACTTCTCCACGCACAGCAACCGGCAGCGGCATATGTTCATCCACACAGGCCTGAAGCCGTTCAAATGCGAGATGTGCGGCAAAGGTTTCAAGCACGCCAGTGAGAAGCGAGCTCACATCACATATGTGCACCTGAAGAAACCCTGGCCTAAACGGAGTAGGGGGAAACGAAGAAGTGATAGCAGACAGGGCATGTTACCCCAACATTCTATACCCACAAGAGAGATGGACACAGTGCAACCAATATGGCCGCCGTGCGACCCCAAAATGGCGGACATGAATATGATTGAAGATAAACCAATGTACTACACCCTAAAGATTTAG
- Protein Sequence
- MNVYSQIKRDPTEPKVDRRRKPFLNGDLNETLFTITDLTHEEQLAEIDKRRESANYKNAVFKCTECYKGFLDEDAYNTHMTRHTDKCGEHACEICKTHFKHPHALRKHITAHHTQRFSCNQCVYVTTHRQTARLHERWHKGTKYHCPHCQDEFVKFTTYMGHIRIKHPSDFVCELCGYSFVSIKGIELHKKLKHRLEDGQVPEDGPFCELCNVRFVSMEAHRRHLNVSARHSAGREANKPKGRKSKETMEREKREREKNREPESKRRYPSQVRKAEGPIPCEQCGVQLEDSRAYHGHFRKVHPDKNRTKYPSMKSPCMCEVCGRMFQSHALLKDHRWVHTGERPFQCDSCDKSFRMKQRLVAHRRVHSQVKASYGCTLCGKNFSTHSNRQRHMFIHTGLKPFKCEMCGKGFKHASEKRAHITYVHLKKPWPKRSRGKRRSDSRQGMLPQHSIPTREMDTVQPIWPPCDPKMADMNMIEDKPMYYTLKI*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00820456;
- 90% Identity
- -
- 80% Identity
- -