Lpop031955.1
Basic Information
- Insect
- Laothoe populi
- Gene Symbol
- TY3B-G
- Assembly
- GCA_905220505.1
- Location
- HG992174.1:8994733-9022164[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.012 1.1 10.8 4.0 1 23 1553 1575 1553 1575 0.98 2 11 0.39 36 6.0 1.8 1 23 1582 1604 1582 1604 0.96 3 11 0.032 3 9.4 0.7 1 23 1608 1631 1608 1631 0.97 4 11 0.26 24 6.6 3.9 1 23 1638 1660 1638 1661 0.94 5 11 0.00012 0.011 17.1 0.1 2 21 1667 1686 1667 1687 0.95 6 11 0.00032 0.03 15.7 2.7 1 23 1769 1791 1769 1791 0.98 7 11 0.0007 0.066 14.6 3.0 1 22 1797 1818 1797 1822 0.93 8 11 0.0058 0.55 11.8 3.0 3 23 1832 1853 1832 1853 0.98 9 11 9.1 8.6e+02 1.7 0.0 3 20 1861 1878 1859 1879 0.93 10 11 2.5e-05 0.0024 19.2 0.5 1 23 1891 1913 1891 1913 0.98 11 11 0.019 1.8 10.1 1.0 1 23 1919 1942 1919 1942 0.96
Sequence Information
- Coding Sequence
- ATGGACGCGAAATCGGTGAAATTTCAGGAGTTTAATCCACAAGTTGATAATTGGGACAATTATATTGATAGACTCAAGTACTGTTTCGAGGCAAATGGAATCGTGTCGGACGCTGCCCAACGGGCGAATTTCTTCACAATATGTGGTGCACAAGTGTTTGAGACGCTTTTGGCGTTAATTACGCCTAAAAAATCAAAAGAAGTGACTTTTAAGGACATTGAAGAAATCCTAACCAAACATTTCAGTCCGAAACCAAATGAAATTTCGGTGACATATAAATTCTATAAACGCGACCAGAAAAAAGAAGAAACCGCTTCACAATATATCGCTCAGCTCAGAACAATTAGTGTCGGCTGCAATTTTCCGAACTTGGAACGAATGTTAAGAGATAGACTCGTTTGTGGAATGCATGACCACAAATTACAATATGAGTTATTGAAGAAAGACAGTTTGAATTATGAAGATGTCGTAGATGCCATGTTGTCCTCGGAAAGTGCAGGAAGAGATGTTCGCATGATACACGGTGTCAATAGTGATAACAATTCATACAGTAAGGTGACTAATATTGGCAGTAATTCTAGTAGTAGTGCCGAGACGTCAACAATGCCAAGTTCGGAACCGATGGACATTAACGCAGTTCAGCCGAGATTGAATATTCGACTGTGTTATCGATGTGGTGATAGGCACAGTGGAGAATGTCGCTTTGTGAACGCAGTGTGCCATTTTTGCAAGAAAAAAGGGCACCTGGAGAAAATTTGTACAGCCAAGAaaaaaagtttgaataaaagaatttatttcACAAACGACAAACCAGACAGTGATTTGAATGGAGTATACAGTTGCGACGGCGGGTCGAGACGGACACCACCAATCAACGTGAACGTGATGTTGGACGGCGAGCCAGTGGTGATGCAAGTGGACAGCGGCGCGAGTTTCTCGCTCATCAATGAGCGCACGTGGCGGGCACTGCGCGCACGTCAGCCCCGCGCCGCCCACGCCACGCTGCGCCCCGTCACACACCGCTTGCGTACATGGACCGAAGCCCCCGTTGCTCTTATTGGACGGAAAACAGTGCAAGTGATTTACAATGACATTGTATGTGATCTGGATGTGATAGTGGCGAAAGGGACAGGCCCGAATTTACTTGGCCGCGACTGGTTCACACCGCTTAATATTtccttaaatattaattttgtatcagACAGTGATAACGGTTTGCTAGACGACATAGTTTCTAAACACAGCAATGTTTTTAAAGATGGTCTCGGTACTTACTGCGGGGATCCTGTTGCTATACATTTAAAACCTGGCATTACACCAAAATTTGTTAAGGCCAGGCCTGTTCCGTATGCAATTAAAGATAGAGTCGAGAACGAGATAGATCGTTTAGTTAGTGAAGGAGTGCTCTGTGCCGTCGCTTACTCCGAGTGGGCTACGCCTGTTGTACCTATAGTTAAAAAATCGGGAGATATTCGTTTATGCGGCGACTACCGCAGTACAGTGAATCAGGCAACCGAGTCAGATACTTATCCAATGCCTACTGCTAGTGAAGTATTCGCCACAATTGCTGGTggtaaatattttactacatTGGACCTGGAGAGAGCATATACACAGGTCGTGGTGGATGAGAATACGGCCAAATTGTTGACATTAAACACATGTAAAGGGTTGTTTACTGTTCACAGGTTAGCTTTTGGTGTAAAAGCATGTCCAGGTATTTTCCAACGTTTGATGACGGCACTACTCGCAGGCATCCCAGGGGTGGCTGTCCTTATTGATGACATCATTATTAGTGGACGATCCGTAACAGAAATGACTCAACGTTTGGACACGGTACTGGCACGTATAAGACGAGCGGGTTTGAGGCTTAACAAAGATAAGTGCAAGTTTTTGAAACAGTCTGTTGAATTTCTTGGATTCGTGATTGACGGTGAGGGTATTCACCCAGCACAGAGTAAAGTAGAATCCATCAAGAAAACGCCCGCACCCCAAAACATCCGAGAATTGCAAGCATTCTTGGGACTGTACAATTTTTACGAGAGATTCATACCACAGAAGGCGACTATATTAGAGCCGCTTCACCGCTTATTAGATAAACCTCAAACGTGGAAATGGACGGAACATGAACAAAACAGCTTTGATACAGCAAAGAGTTTATTATCATCATCTTTGACGCTTGTTCATTATGAGTTAGATAAACCTTTATTGCTGACTTGTGATAGTTCAGAATACGGAGTAGGCGCTGTATTGTCACACGTGATGGACGATGGACAGGAGCGTCCAATCGCCATGGGTTCCAGGACATTACATTTACATGAACGACGTTATTCACAGCTTGATAAAGAAGCCACATCGATTATGTTTGGTATTCAaaagtttcataattatttgactGGAAGATCGTTTACGGTCATAACTGATCATAAACCACTACTGGGTATTTTTGACCCAAGAAGACCTATACCTAACATGTTATCACCTCGTTTAACCAGAATTGCTATTGCACTTACATCACacgattataatataatatacaagccGGGAACACAAATCGGTAACGCAGATGGTCTCAGCCGTTGGCCACAGCCAGTTCCGGAGCAGCCGGAACCTCAACTATATGAAGTACTTTTGATGGCAGAAACACCTGAAGATTTTCCATTTGATGTTGATCAAATTCCAGTTGAGacaaaaattgacaaaatttTATCACGTGTTATACATTACATGTTAACTGGGTGGCCTCCCAAAGTTAAGGACGACAGTCTTCGCCCTTATTGGTTACATCGGTCAGAATTGTCCATACAGGAAGGTTGTGTTTTATTAGGCTGCCGAGTGGTTGTACCTCCGAATTTACGAAAAGTAACATTACAGGCTCTACATTCTACTCACAGTGGTATTGTTGCGACAAAAGCACTAGCTAGAAGCTACGTATGGTGGCCACATATGAACGAAGACATAGAGAAATTAGTAGCTGATTGCACAAAATGCTTGGAGAACAGACATATGCCACCTAAAACTAATCACGCATGGATAACGCCAACTAATCCGTGGTCTCGAATCCACATAGATTTTGCTGGgccatttcaaaataaatactttttaattattgttgatGCTTATTCCAGATGGCCAGAGGTATTAGTTGTTAACAATATGACGTCTGCTATTGTCATACGTAATTTAAGATTATTGTTTGCTACTCATGGGTTGTGTGAAACTATTGTTTCAGACAATGGAACACCATTTGTTTCAGTTGAAATGAAACGATTCTTGATGGCAAACAAAATACGACATGTGACCACGGCACCATATCATCCTGCAAGTAATGGTCTCGCCGAAAGaatggtacagactgtcaaggaCAAACTACGCAAGATGGATAACGTGCCTTGGGATATAAAAATTCCCAATATGTTATTGGGACTACGCGTAACACCATGTGGAAGCACACACAAAACCCCTAGCGAACTCTTGATGAATAGACGCTTACGTACACTTTTAGATACCATTCATCCGAACAATCTTCAACAGAAGAAGACTGAACGACAAATTGTCAGTAATAATAAACAGAAACATAGAGATGCAGACGTTGGACAAAAAGTTATGTACAGAAACTACAGCCATGGTCCACAATGGTCCTCGGGAACGGTAGTGGAAAAACAAGGAACTTCGAAATATAACATTGAAACAGAAAACGGTTCTATTGTAAACAGACACATagatcaattaataaaaaagaaatttgtAAATTCAGAATCAATAGAGGAGGGAATGGTAGAACAAAGTGATAGCACAAGGAATCCTATTGAATCTAATGATAACAGATGTGTCGACACAGAAGTAGAAAATATGCCATCTAGTCATGACTTAGTACAAATACCGAGCTCTACTGAGTTGGCAGACATATTAGGCATTCCTCCAAATGCTGAAGTAGGCTATGCAGGTGGAAAACTTAAAAATAGGCTACATATATCAAACTCAGACGGTCTCCCACTCTGGCTATGCTGGGAGTGCATAGCTCTTCTCAGGAAAGCTGTGAAGTTCAAACATAAGTTGCAGCGAGCTCACTCAATACTTTACGAGTATGTCACTCGCTGTGCACCGTTTCCAATAGACGCTCAAGATCCTGAAGTGACGAAGTATGCTACTCCATATTTGATGTCTACATCAACGCTAACCTGTGAGACGAATGGAAAAGGAAGGATGGGATATCACAAAGTTTTAcagCACGAAAAGCAACTAGCCAAATCAGAGTTGGACGTCCAGCTGCCGATACTCCTGAACAAATCTGAGATAGATCTGGTGAAGCAGGAAGCTGTGTTCTCGGACTACGAGGATAACATCACATTGGATGAGTTCAGGgcaaataaaatcacagatgaGGATATAAGCAATTTCCTGGACGAAAACGAACCGGAAGTGTCTGAAGAGCAGCCGGAAGTCAAGAAGAAgagtaaaaagaagaagaaagaagatAAAACCAAGAAGAAAAAGCAGAGTGAAACACCGGACACGGATGCAAAGACTGAAAAGAAACCTACGCTAAGAAAACCTGTTGAAATAGACCCCAGTAAGATTAGAATAGTAATGCTGAACCCGGAGGAACAAGTCAAACAAAGAGAGGAAGAGAGTAAGACAAACCTAAGGTTCCCGTTCCAATGCAACTTGTGCTTCAGAGGTTTTAACTTTGaagttaaattacaaaaccacATGCACAAACACAGTCCGTCGCGCGGTCCGTTCGAGTGCAAGCTATGCCACATGTTCCTGCCCACCTCCTACAGCTTCAGCGTGCACTCGCTCATCCACACGCGCCGGTACGAGTGCGTCAAGTGCGGCCGCCGGATGACGGACCGCTCCTCCATACTGGACCATTATCGATCTCAGCATGAGGGTGTGATGACGCTGTACACTTGTCAGATATGCGGGAAGGTGTCCAACAACAGTAAGACGCACCGAGGCCACGTGAGGAACCACCACTCCGGCGACCGGCCCAAGTGCGACCAGTGCGGGAAGACCTTCATCAACGCAGACTCGCTGGCGGAGCACCAGCAGCGATGTGCAAGATGTCGAAACAAACTTATCGTGAACTTCTGGGACTTATTTACCATTTTTGAAGCCATTTTGTTTACCAAATACACGCGGTGTGCGCTCGGCATGCAGGCTTTTACTGGCTGTCCGACCCGCGACGCGGTATGCCGCTCGCTTACCGCCCCGCTCCCGCGCAGCCCGCGCAGCCCGCGCCAATCAGGAAGCGTGCATTCAAATATAGGCGCTCGGATCCAccagggtatcaagaactacgagtgctCCGTGTGCGGCGCTCGGTTCCGCACGCGCACTCAGATCAAACATCACCAGCTGAAGCACACCGCCGCCAAGGATTACTACTGCGTCGAGTGCGACACCAGATTCAAGTCGTCACACAGTCTGCGGCAACATCTACAGAAGAGTTTGAAACACAAAGATATAGAAAGCCTTAAATGGGGATGCTCGCGGTGCCACAAGCGCTACTCGTCCGAATACCAGCTCGCCACTCACACACGGGTCCAGCACGAAGGGGTCCGCGCGTGGGCGTGCGGGGTCTGCAGCGCCGCCCTGGCCTCCAGCGCGTCACTGGCCAAGCACGTGGCGTGCGTGCACGCAGGCCGCCGCCCCCCGCCGCGCCACGTGTGCGACACCTGCGGGAAGGCCTTCAGGGGCAAGAGTGTGTTGGCCAACCACGTCCGGACCCACACCGGGGAGAAGCCGTTCGAGTGCTATCTGTGTGCGAGGAAGTTCACTCAGCGCACTGCGATGAAGACTCATGTCAAGTTGGTCCATCTGAAGCAGCCGCGTGGGGCTGCAGCCAAGGTACAGCACCCACCGTCTGAACAAATCCAGCAAAACAACATCACTTGGCCGAGGTGCGAGTTCTATCAAGGGATCCAGAACAGCTAG
- Protein Sequence
- MDAKSVKFQEFNPQVDNWDNYIDRLKYCFEANGIVSDAAQRANFFTICGAQVFETLLALITPKKSKEVTFKDIEEILTKHFSPKPNEISVTYKFYKRDQKKEETASQYIAQLRTISVGCNFPNLERMLRDRLVCGMHDHKLQYELLKKDSLNYEDVVDAMLSSESAGRDVRMIHGVNSDNNSYSKVTNIGSNSSSSAETSTMPSSEPMDINAVQPRLNIRLCYRCGDRHSGECRFVNAVCHFCKKKGHLEKICTAKKKSLNKRIYFTNDKPDSDLNGVYSCDGGSRRTPPINVNVMLDGEPVVMQVDSGASFSLINERTWRALRARQPRAAHATLRPVTHRLRTWTEAPVALIGRKTVQVIYNDIVCDLDVIVAKGTGPNLLGRDWFTPLNISLNINFVSDSDNGLLDDIVSKHSNVFKDGLGTYCGDPVAIHLKPGITPKFVKARPVPYAIKDRVENEIDRLVSEGVLCAVAYSEWATPVVPIVKKSGDIRLCGDYRSTVNQATESDTYPMPTASEVFATIAGGKYFTTLDLERAYTQVVVDENTAKLLTLNTCKGLFTVHRLAFGVKACPGIFQRLMTALLAGIPGVAVLIDDIIISGRSVTEMTQRLDTVLARIRRAGLRLNKDKCKFLKQSVEFLGFVIDGEGIHPAQSKVESIKKTPAPQNIRELQAFLGLYNFYERFIPQKATILEPLHRLLDKPQTWKWTEHEQNSFDTAKSLLSSSLTLVHYELDKPLLLTCDSSEYGVGAVLSHVMDDGQERPIAMGSRTLHLHERRYSQLDKEATSIMFGIQKFHNYLTGRSFTVITDHKPLLGIFDPRRPIPNMLSPRLTRIAIALTSHDYNIIYKPGTQIGNADGLSRWPQPVPEQPEPQLYEVLLMAETPEDFPFDVDQIPVETKIDKILSRVIHYMLTGWPPKVKDDSLRPYWLHRSELSIQEGCVLLGCRVVVPPNLRKVTLQALHSTHSGIVATKALARSYVWWPHMNEDIEKLVADCTKCLENRHMPPKTNHAWITPTNPWSRIHIDFAGPFQNKYFLIIVDAYSRWPEVLVVNNMTSAIVIRNLRLLFATHGLCETIVSDNGTPFVSVEMKRFLMANKIRHVTTAPYHPASNGLAERMVQTVKDKLRKMDNVPWDIKIPNMLLGLRVTPCGSTHKTPSELLMNRRLRTLLDTIHPNNLQQKKTERQIVSNNKQKHRDADVGQKVMYRNYSHGPQWSSGTVVEKQGTSKYNIETENGSIVNRHIDQLIKKKFVNSESIEEGMVEQSDSTRNPIESNDNRCVDTEVENMPSSHDLVQIPSSTELADILGIPPNAEVGYAGGKLKNRLHISNSDGLPLWLCWECIALLRKAVKFKHKLQRAHSILYEYVTRCAPFPIDAQDPEVTKYATPYLMSTSTLTCETNGKGRMGYHKVLQHEKQLAKSELDVQLPILLNKSEIDLVKQEAVFSDYEDNITLDEFRANKITDEDISNFLDENEPEVSEEQPEVKKKSKKKKKEDKTKKKKQSETPDTDAKTEKKPTLRKPVEIDPSKIRIVMLNPEEQVKQREEESKTNLRFPFQCNLCFRGFNFEVKLQNHMHKHSPSRGPFECKLCHMFLPTSYSFSVHSLIHTRRYECVKCGRRMTDRSSILDHYRSQHEGVMTLYTCQICGKVSNNSKTHRGHVRNHHSGDRPKCDQCGKTFINADSLAEHQQRCARCRNKLIVNFWDLFTIFEAILFTKYTRCALGMQAFTGCPTRDAVCRSLTAPLPRSPRSPRQSGSVHSNIGARIHQGIKNYECSVCGARFRTRTQIKHHQLKHTAAKDYYCVECDTRFKSSHSLRQHLQKSLKHKDIESLKWGCSRCHKRYSSEYQLATHTRVQHEGVRAWACGVCSAALASSASLAKHVACVHAGRRPPPRHVCDTCGKAFRGKSVLANHVRTHTGEKPFECYLCARKFTQRTAMKTHVKLVHLKQPRGAAAKVQHPPSEQIQQNNITWPRCEFYQGIQNS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -