Basic Information

Insect: Laothoe populi
Gene Symbol: -
Assembly: GCA_905220505.1
Location: HG992157.1:16666158-16667786[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00041 0.039 15.4 0.4 1 23 205 228 205 228 0.96

2 10 0.13 12 7.5 0.2 3 23 238 257 236 257 0.95

3 10 0.0007 0.067 14.6 2.1 2 23 272 292 271 292 0.97

4 10 0.22 20 6.8 1.0 2 23 304 325 304 325 0.96

5 10 1.1 1e+02 4.6 0.3 2 23 347 367 346 367 0.80

6 10 0.014 1.4 10.5 4.8 1 23 374 396 374 396 0.94

7 10 0.0034 0.32 12.5 1.1 1 23 402 424 402 424 0.99

8 10 4.8e-05 0.0045 18.3 3.7 1 23 430 452 430 452 0.97

9 10 2.2e-05 0.0021 19.4 2.1 2 23 459 481 458 481 0.97

10 10 0.00034 0.032 15.7 0.4 3 23 489 510 488 510 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00041	0.039	15.4	0.4	1	23	205	228	205	228	0.96
2	10	0.13	12	7.5	0.2	3	23	238	257	236	257	0.95
3	10	0.0007	0.067	14.6	2.1	2	23	272	292	271	292	0.97
4	10	0.22	20	6.8	1.0	2	23	304	325	304	325	0.96
5	10	1.1	1e+02	4.6	0.3	2	23	347	367	346	367	0.80
6	10	0.014	1.4	10.5	4.8	1	23	374	396	374	396	0.94
7	10	0.0034	0.32	12.5	1.1	1	23	402	424	402	424	0.99
8	10	4.8e-05	0.0045	18.3	3.7	1	23	430	452	430	452	0.97
9	10	2.2e-05	0.0021	19.4	2.1	2	23	459	481	458	481	0.97
10	10	0.00034	0.032	15.7	0.4	3	23	489	510	488	510	0.97

Sequence Information

Coding Sequence: atgttaccCAGAATCGAAAGGAAATCTTCAGTGAACTCAGTACAAAATgaagagaaaataaatatgtgtaGGATATGTTTAAAGGCTGGTGACATAGCCATATTCGGCGAAAGCGACCTTTCACGAAACGTCGTCGAGTTCGCAGCAATCACTATCAATAAGTATGATAACTTTCCCAAATACATTTGCAACAAATGCAATCTGCTGCTGGAAGCTGCTGTAGTTTTCAGAAAAACTGCAAAAAAATCTGACCAGATACTCCACAGTATAAAAGCATCTGATATAGATGATAGCTCAGAATATTCGTGGGTTGTCGAGAATTTACTTGCAGCTAAAACAAGCAATAACAATTCATATTcagatttttatgaatatgaTAACACTGAGGAGCCATTGTTTGATAGTGAAGCTAAAGATGATGACACTGACAATCTATCCAGTGATAGTGAGAGCAGTGctgatttaaaaaatgaaagAGAATATTTATGTACCAAGTTTTTTTCTGAAGAGGAATGTGATAGCAACAATACTACACCAGTAGAAACTGTTAAGAATGATACATACATAGTAATAGTAGGGGGTGaaaataaacaagaaaataaaacagATCCCTTCACTTGTAGTAATTGTTACACAAGTTTTAAAACAATAGGTGAATTGGAAAATCACACTGAAGTGGAACACAATATAAAACTAACTGACAAAGTTAATTGTGCAGTTTGCAATGAAGTAGTAAGCAAATCATTCTATAAAGTACATATGAAACTGCACAGAGAAAAGTATCTAGAAAAGAAAAAACCACCCCGAAAAGTTGAATGtaaaatatgtaacaaaaaattCAATAGAACATACTACAAGCAACACTTGAAGATACATAGTTCAGACAATGATAAAACTGAGAGAATGCGTTACTGCACATTATGTCGAAAGTCATTAAACATGGGCTACTATAATGACCACATGAGACGAATTCATAAATTAGGACCAAATGGAGAAAAGCTTCAACAAGTACAGGACAAACGGAAACTTAAACATGTTCAATGTCCTGTTTGtgacaaaaaaattattgaggagaactacaaaatccatttagcACACCATGGAAAGCCCCCAAAAAAGTACATTTGTGAACATTGTGCCAAAGAATTTATACATCCATCGGCATTCAAAACTCATTGTTTAACACATGGAGGGgaatttaaatacaaatgtgaattTTGCCCATATCGTGCACAGCACTTAGCTTTACTAAAAGTGCATGTacgaactcacacaggagattacatttataaatgtaCAGAATGTCCTGcgaaatttattacaaaaagcaACCTTAACCAGCATTGTCGACGACATGAAGGTCCTGGGAACATAAAATGCCATGACTGCGACAAAGTGTTTTATCGTATGCGTAACATGGAAGAGCACTACAAAACAATccatttgaatattaaagatgtTCTTTGCACCATATGCGGCAAGGGTTTCTCTAACAGAGATAGAATGCTAAGCCATCAGATTAAAGTACATAACAGAGAAAAACTGTTGCCACGAGTTCCATCATATTTGAAGGCCAGGCAAGACAACTCAAGCGTGCATGTCGAAGAAAATGAATTGATTATATTATAA
Protein Sequence: MLPRIERKSSVNSVQNEEKINMCRICLKAGDIAIFGESDLSRNVVEFAAITINKYDNFPKYICNKCNLLLEAAVVFRKTAKKSDQILHSIKASDIDDSSEYSWVVENLLAAKTSNNNSYSDFYEYDNTEEPLFDSEAKDDDTDNLSSDSESSADLKNEREYLCTKFFSEEECDSNNTTPVETVKNDTYIVIVGGENKQENKTDPFTCSNCYTSFKTIGELENHTEVEHNIKLTDKVNCAVCNEVVSKSFYKVHMKLHREKYLEKKKPPRKVECKICNKKFNRTYYKQHLKIHSSDNDKTERMRYCTLCRKSLNMGYYNDHMRRIHKLGPNGEKLQQVQDKRKLKHVQCPVCDKKIIEENYKIHLAHHGKPPKKYICEHCAKEFIHPSAFKTHCLTHGGEFKYKCEFCPYRAQHLALLKVHVRTHTGDYIYKCTECPAKFITKSNLNQHCRRHEGPGNIKCHDCDKVFYRMRNMEEHYKTIHLNIKDVLCTICGKGFSNRDRMLSHQIKVHNREKLLPRVPSYLKARQDNSSVHVEENELIIL*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -