Basic Information

Insect: Laothoe populi
Gene Symbol: RREB1
Assembly: GCA_905220505.1
Location: HG992171.1:6794362-6799539[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 2.6 2.5e+02 3.4 1.8 1 19 76 94 76 99 0.79

2 12 1.3 1.3e+02 4.3 0.0 1 22 132 153 132 153 0.92

3 12 0.023 2.1 9.9 0.1 1 23 279 301 279 301 0.97

4 12 0.0012 0.11 13.9 0.4 1 23 310 332 310 332 0.99

5 12 0.00075 0.071 14.6 2.0 1 23 338 361 338 361 0.97

6 12 0.0031 0.29 12.6 1.7 1 23 694 717 694 717 0.96

7 12 0.00025 0.024 16.0 1.3 2 23 908 929 907 929 0.97

8 12 0.026 2.4 9.7 5.3 1 23 935 958 935 958 0.97

9 12 0.05 4.7 8.8 2.0 1 23 991 1015 991 1015 0.94

10 12 0.027 2.5 9.7 0.1 1 23 1038 1061 1038 1061 0.93

11 12 0.0019 0.18 13.3 0.2 2 23 1101 1122 1100 1122 0.96

12 12 0.017 1.6 10.3 5.0 1 23 1128 1150 1128 1150 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	2.6	2.5e+02	3.4	1.8	1	19	76	94	76	99	0.79
2	12	1.3	1.3e+02	4.3	0.0	1	22	132	153	132	153	0.92
3	12	0.023	2.1	9.9	0.1	1	23	279	301	279	301	0.97
4	12	0.0012	0.11	13.9	0.4	1	23	310	332	310	332	0.99
5	12	0.00075	0.071	14.6	2.0	1	23	338	361	338	361	0.97
6	12	0.0031	0.29	12.6	1.7	1	23	694	717	694	717	0.96
7	12	0.00025	0.024	16.0	1.3	2	23	908	929	907	929	0.97
8	12	0.026	2.4	9.7	5.3	1	23	935	958	935	958	0.97
9	12	0.05	4.7	8.8	2.0	1	23	991	1015	991	1015	0.94
10	12	0.027	2.5	9.7	0.1	1	23	1038	1061	1038	1061	0.93
11	12	0.0019	0.18	13.3	0.2	2	23	1101	1122	1100	1122	0.96
12	12	0.017	1.6	10.3	5.0	1	23	1128	1150	1128	1150	0.97

Sequence Information

Coding Sequence: atgTACTCTTTTGTTACAGAAATCAAAACAGAGGATATCAGTGAAGCGAAAATCGACGCCGAGGAAATGGATCAACTGAAAATTGAACAGGAATTGCGCGTTCGAACAACTAGTATAGACAGCGATAACAGGTCGGATAGGAGTGACGAGGAGGACAGACGGGCCCGAAAAAGGGCCGCGTCGTCTTCCCCATCTCCTTACCCCATGGATAAAAGGATCGCGCGCTTCGAGTGCCCTAAATGCAGGCAACGATTCGACTCTGTCAATGCGTACGACATCCATTGCTTCACAGCCCATGGAGATAACAGGTCGGGCTACAACGATAACTACGAATTCTCCAGTAAAAGAATCCCAGAAATTATGAGGAACACCCAAATGATGCCAGAGCAGCGCTACCGTTGCGACGCCTGCTCTAGGGAATTCCCAACCGTTCCTGCATTGGACATACACAAAAATACTTGCTCGGCTCGAGTAACAAGCCCGGAACGCATTAGACGTGAAGATTTCTTTGAGAAATTAGATCTTAGAAACAGGACTTTTGCGATTCCTGGCACGTTGACCCCGCCGATGGACAGATTCGCATCTAAATTTGAACATGGCCATATTACCACAAATGGCATACGCCATATCGATGCCGCTCGAGATTTAGCTGATATTCAGTCAATCTTGAGCGTAACTTCGGATGGTGGCCTTTTAGAAAGATTGACGGGCACTAGAGTTCCCTTAGAAAATAGTGTCCTTACACCTCCTGATACCATTATTAAGGAACGGGAGCCAGAAGAAACGCAAGATAATTTCGCGGCAGAATTCAGAAGAATGAAATTACGAGGAGAGTTTCCTTGTAGATTGTGCCCAGCTAAGTTTCCGAATCTCAGAGCATTAAAGGGGCACAACAGAGTGCATCTCAGTGGGACCGGTCCCGGTCCGTATCAATGCAACATGTGTCCTCACGCTTCTCTCGATAAAGCTGCCTTGGTAAGGCATATGCGCACCCACAATGGGGATCGGCCATATGAATGCGCTGTTTGCAATTACGCATTTACTACAAAAGCAAACTGCGAAAGACATTTGAGAAATCGACATGCTAAGGTGACGAGAGAAGACGTCAAGCGCTCAATCATTTATCATCCATCTGAAGATCCTAACAATGACGAGGTTAACTCGAAACTCGCTAGGCATGAAGTAAAAAGACCTCTAGCGTTCCACACACCTGAAGTAGATATACGGAATGACAGCACTGGACGTGACACACCGCTTACGCATTTTACACCAAGCTTCATTACTAACAGACATCCAGTGGCGAATCTATCAACTAAGCCGATAGCTGAAACCCCATTAATTTCCAGAGAGCCAGAGCAACCAATTCCAAGAATCAAAGTGAAAGGCATTGGACAGCTGACGCAAATACCAGAATTTAGATCACCAGAAATAACATATGAACCCAACGACGTCCATTCAGATACGTACGATGGAGAAACTCCAGTTGATTTAAGTACAAGCGATAACAACAGCTGCGACGTCTTAGATTTAAGTAAAAAGAAACGTGACGTTGATGAAGAACCTAAAGCACCGCCGCGGCCTTCGTTCGATCCGGACCCAGCAACAGATGCGGCATCAGACTTCGAAAAGGCAAGATTCTTGTTAGCCCAACAGAGACTTTTTGAAACATCTTTTCCTAAAATAGCTAACCCTGCTTATTATGCGTCCCATCTTTCTCAAATATATTCAGGTCTACCGGGGCTACCGCTTCCGCCGTCCTTTCCTTACTTTCTTCTACCCTCGTTTTTTTCTAACCCATCTGATCCACAAGAACTAGCCGAAATAAAACAACGCATACAAAGCATGTCTGGAGGAAGGTTAGTTCCTAACGAACAAGAAGCTCAACTAAAGCAGGAGTCAGAAGAAGATGAAGTAAAACCGGTTCCGCTGTCAATATCCCCTGCATTGTCTCCACATACCGAATCTCCACGGCCTTTGAGCAGCAACCTTGTACCGCAAACGGATTCTGTGAAGCTGGTCATAAAAAACGGTGTGCTCATGCCGAAACAAAAGCAACGACGTTACCGTACTGAACGACCTTTCTCTTGCTCTCAATGTACGGCAAGATTTACTCTCCGTTCGAATATGGAACGCCATGTAAAGCAACAGCATCCTCAGCATTGGAGTGTTAGAAGACCAGCGCCGAGAGCTCCGCCACCATACCCAACACACGATACGCTGGCAGGTGTTAAGATGGCTCTTTTAGCCCGCCATCTAGAACGACCTCTACAACAACAAGAGCGTTCACCAGTACGTCGTGACTCTGACGAAGTAGCTGACAACGAAGAAGACGAAGATGATACTTTAGTTATTGATGAAGATATTAAACCTGAAGAACACACAGCGGCTCGTAGAGCGGCTGCTGAGATATTAATGGCCACTTGTCAACAAGAAATGAGTAAAGATTTTGACCTTAAAATCGCCGGGAATTTGATCAACAAACCCACTCCGATGGAGACAGATAAGACTGAAGCAGGAACTAATCCCGCACCAACACCTGGTCAAGAGTTACTGCCATTACCAGTAGTCCCCACACGGAGTGACGaggaagaagatgaagaaggtTTAGTGGCATCCACCAGTGAAGGGAACAACTCGGGAAGCGatgaaaataaGTCAGAATCGGACACTACGCTGCCTCCAAAGAAGAAATCCGCATATAGTCTTGCACCGAACCGTGTGTCCTGTCCATACTGCCACCGAAAATTCCCATGGTCGTCATCCCTCCGAAGACACGTCCTAACCCACACCGGGCAGAAGCCTTTCAAATGCCCCCACTGTCCGTTGCTCTTCACCACTAAATCCAACTGCGACCGCCATTTACTAAGAAAGCATGGTGGTTCCGCAAGGGCTATACTGGCAGAGCCAATTTCTGATGCAATGTCGCCTCCTCAACCAGTAAATGACACTCGAAGCGTCCCTGAGAGACCATATAAATGCACCTCGTGTCCGACGAGCACTTTTTCTTCCATGGATACATTGAAGAAGCACATGTCTTCGCGACACGGTACTGACTCACAACCAGGCTCTCCCAACCCTGATATAGACGATAACTCCGACTGCGGTCTGGTCTTCAAGTGCCATTTGTGTGAAGCGTCTTTTGGCGACAGGAGTGCTGCGTTGGCTCACTTAGGGTCCGCACATGCTACGGAGTACGAACAACTGGTGACTAAAGGCGCCTTGGACGCTGCCAGTGACCGCAGCGAGAGTGCTGATGATGACGAAAGGGGCAAATTTCCCGATCATGCTAATAGGAAGGTCGTCTGTGCCTTCTGCGTTCGTCGTTTCTGGTCGGCCGAAGACTTACGTCGTCACATGAGAACTCATTCAGGCGAACGGCCATTTGCCTGCGACTTGTGCACTCGTCGGTTCACACTCAAACACAGCATGCTGCGCCACCGCAAGAAGCATAGAGACGAGGTCACTGATGATGAGGAAGCTTCGCCTCCTAATACGCCCTTGGAGGGTCATAGCGTTTCTAATGGCTACCGCTACCAAGACGAAGACGGCTCTGGAAACGAGATCCCGAGCAACGTTAACAACAACAACTCACCGCCTTCAGGACCTTACGAGAAGAAACTCAAACTCGACATGACATCGCGCAAATACTCTTCTGAAGCGGACAATGATGGCGAAAATGGCACCGATCTCATCGGGAAACTCCTGGGCATCCCTGACAAGACCATAAACAAGCTGCTCTCCTCCGCCGACGAGGCTGCCAAGATCCTCGGAGTCAACAAATGA
Protein Sequence: MYSFVTEIKTEDISEAKIDAEEMDQLKIEQELRVRTTSIDSDNRSDRSDEEDRRARKRAASSSPSPYPMDKRIARFECPKCRQRFDSVNAYDIHCFTAHGDNRSGYNDNYEFSSKRIPEIMRNTQMMPEQRYRCDACSREFPTVPALDIHKNTCSARVTSPERIRREDFFEKLDLRNRTFAIPGTLTPPMDRFASKFEHGHITTNGIRHIDAARDLADIQSILSVTSDGGLLERLTGTRVPLENSVLTPPDTIIKEREPEETQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPNNDEVNSKLARHEVKRPLAFHTPEVDIRNDSTGRDTPLTHFTPSFITNRHPVANLSTKPIAETPLISREPEQPIPRIKVKGIGQLTQIPEFRSPEITYEPNDVHSDTYDGETPVDLSTSDNNSCDVLDLSKKKRDVDEEPKAPPRPSFDPDPATDAASDFEKARFLLAQQRLFETSFPKIANPAYYASHLSQIYSGLPGLPLPPSFPYFLLPSFFSNPSDPQELAEIKQRIQSMSGGRLVPNEQEAQLKQESEEDEVKPVPLSISPALSPHTESPRPLSSNLVPQTDSVKLVIKNGVLMPKQKQRRYRTERPFSCSQCTARFTLRSNMERHVKQQHPQHWSVRRPAPRAPPPYPTHDTLAGVKMALLARHLERPLQQQERSPVRRDSDEVADNEEDEDDTLVIDEDIKPEEHTAARRAAAEILMATCQQEMSKDFDLKIAGNLINKPTPMETDKTEAGTNPAPTPGQELLPLPVVPTRSDEEEDEEGLVASTSEGNNSGSDENKSESDTTLPPKKKSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGGSARAILAEPISDAMSPPQPVNDTRSVPERPYKCTSCPTSTFSSMDTLKKHMSSRHGTDSQPGSPNPDIDDNSDCGLVFKCHLCEASFGDRSAALAHLGSAHATEYEQLVTKGALDAASDRSESADDDERGKFPDHANRKVVCAFCVRRFWSAEDLRRHMRTHSGERPFACDLCTRRFTLKHSMLRHRKKHRDEVTDDEEASPPNTPLEGHSVSNGYRYQDEDGSGNEIPSNVNNNNSPPSGPYEKKLKLDMTSRKYSSEADNDGENGTDLIGKLLGIPDKTINKLLSSADEAAKILGVNK*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01010754;
90% Identity: iTF_00063947;
80% Identity: -