Lpop014276.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Laothoe populi
Gene Symbol
-
Assembly
GCA_905220505.1
Location
HG992157.1:15030226-15040627[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.007 0.66 11.5 4.0 1 23 267 289 267 289 0.98
2 13 0.072 6.8 8.3 3.5 1 23 297 320 297 320 0.93
3 13 1.5 1.4e+02 4.2 1.2 1 23 324 347 324 347 0.88
4 13 0.00067 0.063 14.7 2.2 1 23 422 444 422 444 0.99
5 13 0.00028 0.026 15.9 0.6 2 23 453 475 452 475 0.96
6 13 2.1 2e+02 3.7 5.8 1 23 479 501 479 501 0.98
7 13 0.00011 0.01 17.2 2.7 1 23 506 529 506 529 0.98
8 13 0.14 13 7.4 1.8 1 23 533 556 533 556 0.86
9 13 6.8 6.4e+02 2.1 1.2 2 20 576 594 575 596 0.85
10 13 0.63 59 5.4 0.0 2 23 648 670 647 670 0.94
11 13 5.3e-06 0.0005 21.3 0.6 1 23 679 701 679 701 0.98
12 13 0.00075 0.07 14.6 0.8 3 23 709 729 707 729 0.96
13 13 7.3e-06 0.00069 20.9 2.0 1 23 735 758 735 758 0.98

Sequence Information

Coding Sequence
ATGTTGGATTTAAAAGCGTGCACGGTGTGTTTTAGTACTGATATAAAGTTATACAGTTTGAACAAGGGAAGTTTGAGAAGTGAATACAATTTGGTGTCCGGCCTCCATACGCAATCGGGCAACGGTCTTCCGGAGTTTCTGTGTGTGGCATGCTCCGCGCTGGTTAAACGGTCCATTAAGTTTAGAGATAAATGCCAACGAGCTTATTATGCTTTACAAGAAATATTGCACAGAAGTAAAGAGATAAATAAGTCTCATTTGCATTTATTTGATAGAAAAGAGTTTGGAATCATGCCTCCGCTATCATATGTGGAtctgaatcgaacccactatgAAGAGGCTAAATTTCAATGGGTCCAACACAGCAGACTCATGGTCACTACGGGAGATAAAATACCTATAGCTCATTACAGTACTTTAACAAATCAAGATACATTTTGTGACATAGCAGCGAAAAATGATTTGCATACTGAGTACAATATCAAATCAGAGAGTGATCAGGAAACATCATATTTTGATGTAAACACTAAAGAAGAAAATGGTTTAgaacaattaaataatacaaatacagATGATATTGCTGCTAGTGATGATTATTTTGATGATACTCATGATGAAATCAATGATAAAGACACCAAAAACCTtgttggaaaatatgataacaaTACCAACacatttaaacaaaacaatatggTTGATGGCCTCCAACTTGATGAAGAATATGCTAGTATGTATCCCATTTCCGTGAACGAAGCCAAAGCAGCAGTGGAAGTGTATAAATTATTCAGCAATGGGAAACACAAATGTGACGTGTGTGACAAAAGGTATCATAATGAAGAAAGATTGAATATACATTCTCGTATGCATGATAAGCATACTAGTGGTACTTATCACTGCAGTCtttgcaattattattataaaactgatTACCTACTACAATTGCACATGACGGACAAACACATGTACAAGTATGTGTGCAAGAAATGTCCAGAAGTTAGTTTTCATAGACTATCAGCCAAGCAACACTACATATGGACACATATACAGAAAGGTAAGAAGAAAAATGCGAATTGGTACGAGTCACGACCCGCATGGTTGAGCGGGAAAGGTGGGAAGCGAGTAAAAGGCGTTGTGACCCTCCGACCtgtcaaaaaaaataaaaaattaccagAAGACTTTTTAATATACACACCTATTGGTCAAGAAGAGCAATACAAACTTGTGCAGGACAGAAAGAAGACGAGGAATTATATTGATTCAGTGTTTAAATGTGAATTGTGTTATAGAGGATTCAGAGAATCGATAACGTATGAGAAACATATGAAAAAACATGATCCGGCATATGCGGGTAATGTTCAATGTGACATGTGCAAAATATATTTCCGGGACCCTCGGAAGCTTTACAAACACATGAACATCACACATCTCTTCAAGTATTCCTGCCAACTGTGCAGTTTCTTCTGTGTCAATAGGAGTCAAGCCCACTCGCATTATAGATGGCATAAAAACGTAACGTATTCGTGTCCACATTGTGAAAAAGTATTTAAGAAACTGTCAACTCGACTGACTCATATAAGAATAAAACATCCGTCGACGTATATATGCAATTTGTGTGGTCACAGTTTCGTCAGCGAAAACGGTCTATATTGCCATAAACAAATTGCACACAGTGCGGAGGAGCGTGAGTTGAGTGAGTCAGCGCCGTCGGACCCGACAGACCCGTGCTACTGCGCCGACTGCGGCCTGCACTTCCTCAATGAACAGGCGTTCTTCACACATCTCGGCAGCTCCAGCAAGCACGCCTCCACCAACATTTCAATAAAACCGAGTCGTAAGCTGGAGTTGGCTTCTCAGTCGGACACGGGCGACAAGAAGCGAGGCCGGCCGCGCATGGCGGGCCCCAGGTCTGACATACTCAACAACGGAATCAGTACGTCCACCAAGTGCGAAGTGTGTGGTGTAGTGCTGGTGAACGACGTGCAAGCCCGCAAGCACTACGAGTCGGAGCACCCCGGCACCGAGTACCTCAAGCGGTACATGTGCGACGTGTGCGGACACGCCACCAGACAATACGCGAACCTCATGGTGCACATGCGGACTCATACTAACGAGAAACCGTACGGGTGTCCACACTGCGACAGGCGGTTCAGCATGCCCAGCAACAGGGACCGGCATCTTGTTGTGCATACAGGGGAAAAACGCTACGAGTGTCAGCATTGTAACCGTCGCTTCACACAAAGCAGTGCTGTTAAACTGCACATACAGACGGTGCATCTGAAAATACCTTACGCTCCCTGGGTGAAGAAGAACAGGAAACGTCGCAAGGAGTTAGAAGGAACTAGTGCGCCAGTCAGTGCTGTGACTTCCAGCCAACCGTGTCTGCCGCCCCCACACAAACTGCTGCTCGATACGCAAGGAGATTATCTGAATGCTTATATCAATTATAGTGATTATTAA
Protein Sequence
MLDLKACTVCFSTDIKLYSLNKGSLRSEYNLVSGLHTQSGNGLPEFLCVACSALVKRSIKFRDKCQRAYYALQEILHRSKEINKSHLHLFDRKEFGIMPPLSYVDLNRTHYEEAKFQWVQHSRLMVTTGDKIPIAHYSTLTNQDTFCDIAAKNDLHTEYNIKSESDQETSYFDVNTKEENGLEQLNNTNTDDIAASDDYFDDTHDEINDKDTKNLVGKYDNNTNTFKQNNMVDGLQLDEEYASMYPISVNEAKAAVEVYKLFSNGKHKCDVCDKRYHNEERLNIHSRMHDKHTSGTYHCSLCNYYYKTDYLLQLHMTDKHMYKYVCKKCPEVSFHRLSAKQHYIWTHIQKGKKKNANWYESRPAWLSGKGGKRVKGVVTLRPVKKNKKLPEDFLIYTPIGQEEQYKLVQDRKKTRNYIDSVFKCELCYRGFRESITYEKHMKKHDPAYAGNVQCDMCKIYFRDPRKLYKHMNITHLFKYSCQLCSFFCVNRSQAHSHYRWHKNVTYSCPHCEKVFKKLSTRLTHIRIKHPSTYICNLCGHSFVSENGLYCHKQIAHSAEERELSESAPSDPTDPCYCADCGLHFLNEQAFFTHLGSSSKHASTNISIKPSRKLELASQSDTGDKKRGRPRMAGPRSDILNNGISTSTKCEVCGVVLVNDVQARKHYESEHPGTEYLKRYMCDVCGHATRQYANLMVHMRTHTNEKPYGCPHCDRRFSMPSNRDRHLVVHTGEKRYECQHCNRRFTQSSAVKLHIQTVHLKIPYAPWVKKNRKRRKELEGTSAPVSAVTSSQPCLPPPHKLLLDTQGDYLNAYINYSDY*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00859816;
90% Identity
-
80% Identity
-