Lpop031812.1
Basic Information
- Insect
- Laothoe populi
- Gene Symbol
- -
- Assembly
- GCA_905220505.1
- Location
- HG992174.1:7229267-7244975[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.3 29 6.4 1.8 1 23 226 248 226 248 0.97 2 11 0.0093 0.88 11.1 0.5 1 20 255 274 255 278 0.89 3 11 4.9 4.6e+02 2.6 2.4 1 23 282 304 282 304 0.94 4 11 0.00061 0.057 14.9 3.7 1 23 309 332 309 332 0.98 5 11 0.0023 0.22 13.0 3.2 1 23 336 359 336 359 0.95 6 11 7.9 7.5e+02 1.9 0.3 3 22 376 395 375 399 0.90 7 11 0.00026 0.025 16.0 0.1 3 23 445 466 443 466 0.96 8 11 4.9e-06 0.00046 21.4 1.8 2 23 476 497 475 497 0.97 9 11 1.7e-07 1.6e-05 26.0 0.5 1 23 503 525 503 525 0.98 10 11 4.5e-06 0.00042 21.6 2.5 1 23 531 553 531 553 0.98 11 11 2.2e-05 0.0021 19.4 1.9 1 23 559 582 559 582 0.98
Sequence Information
- Coding Sequence
- ATGACAGAATTCAAAATTTGCCGAATATGCCTGGAAAACAATGTTCGCTTGCATCAAATATCGGCAGAAGTTCaggatatttatgaaaaattaataaataagaagGTTCAAGAAGATGGAAATCTATActttgcatgttacatatgttatcATCAGCTAAAGAACTGCCAGAAGCTTGCTACAAAATCACAGAAATCAGACGAGTTGCTTAAACAAATCTTGGCCAATACTCTTGAGCTGGATTCAAAACCAGTTACACTTATAGATAGAAAGGCTTGTGGTCTACTTAGTTCCATATCTGTGACCACTTTGGAGTGTTATTCAATACATGAAAATGATGCCAAGCCAGATAACGATATTAAATGTGAAGGTAACAGAGTGCTGGTCAAAAATGAACTTTATGATAAAGccaCGTCAGAATCAAAGATAGAATTTGATGATAGCGATGAAGTGAAACATGATCTGATTGCCTCCGAGTCTGAAGATGACCTGCCGTTGAAGAGTATTAGCACTAGACAGACCCTGGACAGAAGGGTCAAGGTGAAGAAGTTAAGGGTCAAGAAAAGAAAGGAAGAAGATTTCCCAGTGGATGCCTGTGAGGTGATATTGACCAAGGAACAACAACTTGAGGAGTTGATGGAGAGGGCAAAGTCCCTGAACTTTACCAGTTCACCGTTCAAATGTGAAATGTGTTATAAAGGATTTCTGGAGACGAACGCATATGAGAATCATAAGAGGAAGCATGACGTGCGCAGCGGTCAGCACGAGTGCGACATATGTCGCATGCGATACAGATCTGCGAGATTGTTGCGAACGCACGCGTTTGCGGCACATGCGAGGCTCTATCGATGTAACAAATGTGCACACGTGTCGCATACCGCTAACCAAGCGAGGGAGCATGAGAAATGGCACAATGGTTACACATACGAATGTCAATTGTGTGGACAGAAATTtagGAAATCAACCTCGTACCTAACGCATAAACGCAAGCGCCACCCCACTGAGCACGTGTGTCACATATGTGGGGAAAGCTTCGTCGGCAGACATGGACTTCTCATGCATAAGAGTAAATCACACAAGTGGGACCAACAGACGCCAGAGGAGGGGTCGATGTCCGACCGCTTCTGCGTGGAATGCAACATGCAATTCCTGAGCATGAAAGCGTGGAACCGACATATATTGACTTCAATCAAACATACGCTGAGCAACGACGGCTCTCAATGTAAGATATGTCATCAGATAGTCTCTGTAGATATGTCCACACATATGAAGGAACATGAAAAATCCCTCCGAGAGACACCGTTGGTCGCCAAAAAGCTGGTCAAGCTAGCGTGTGAGCAGtGCGACGCGTATTTTGTGGGTAGATCTAATTTGAGAGCTCACGTGAGACGCGTCCATCTTGGATTGAAATATAACAAGAATGTTGTGTGCGAAGTGTGCGGGAAGAAATGTACGTCTAATGCGAGTCTTAAATACCACCAAAGAACGCATACCGGGGAGAGACCGTTCCCGTGTTCTGAATGCGGCAAGCGGTTCCCGGACAACAACCAGTTGAGGATACATACACGGACCCATACCGGGGAGCGGCCGTACTGTTGCACTGCGTGTGGAAAACGGTTCAGTCAAAAACCGGCGCTTAACCGACATTACAGGGTACACACAGGTGTGAAGCCATACGAATGTCAATACTGTTCGAAAACATTCAACCAATCTAATTCTATGAAACTGCACGTCAAGACGGTGCATTTGAAACAACCGCCGAATAGAAAGAAAGAGAATAACGCTAAGAGCGAAGTCATCTCATATGTTATTACGTAA
- Protein Sequence
- MTEFKICRICLENNVRLHQISAEVQDIYEKLINKKVQEDGNLYFACYICYHQLKNCQKLATKSQKSDELLKQILANTLELDSKPVTLIDRKACGLLSSISVTTLECYSIHENDAKPDNDIKCEGNRVLVKNELYDKATSESKIEFDDSDEVKHDLIASESEDDLPLKSISTRQTLDRRVKVKKLRVKKRKEEDFPVDACEVILTKEQQLEELMERAKSLNFTSSPFKCEMCYKGFLETNAYENHKRKHDVRSGQHECDICRMRYRSARLLRTHAFAAHARLYRCNKCAHVSHTANQAREHEKWHNGYTYECQLCGQKFRKSTSYLTHKRKRHPTEHVCHICGESFVGRHGLLMHKSKSHKWDQQTPEEGSMSDRFCVECNMQFLSMKAWNRHILTSIKHTLSNDGSQCKICHQIVSVDMSTHMKEHEKSLRETPLVAKKLVKLACEQCDAYFVGRSNLRAHVRRVHLGLKYNKNVVCEVCGKKCTSNASLKYHQRTHTGERPFPCSECGKRFPDNNQLRIHTRTHTGERPYCCTACGKRFSQKPALNRHYRVHTGVKPYECQYCSKTFNQSNSMKLHVKTVHLKQPPNRKKENNAKSEVISYVIT*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -