Lpop031598.1
Basic Information
- Insect
- Laothoe populi
- Gene Symbol
- zfy1
- Assembly
- GCA_905220505.1
- Location
- HG992174.1:4811857-4822003[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.5 2.4e+02 3.5 0.3 2 21 56 75 56 76 0.92 2 12 0.49 46 5.7 1.8 1 23 210 233 210 233 0.97 3 12 0.00041 0.039 15.4 4.3 1 23 239 261 239 261 0.98 4 12 4.1 3.8e+02 2.8 3.9 1 23 265 288 265 288 0.95 5 12 0.12 11 7.6 7.1 1 23 292 315 292 315 0.95 6 12 0.001 0.096 14.1 4.5 1 23 318 341 318 341 0.97 7 12 0.00035 0.033 15.6 1.3 1 23 344 367 344 367 0.93 8 12 0.17 16 7.2 0.1 3 20 376 393 375 395 0.92 9 12 0.00039 0.037 15.4 0.1 2 23 408 430 407 430 0.94 10 12 3.6e-07 3.4e-05 25.0 0.6 1 23 436 459 436 459 0.98 11 12 1.9e-05 0.0018 19.6 0.7 3 23 470 490 469 490 0.98 12 12 0.0004 0.038 15.4 0.1 1 23 496 519 496 519 0.96
Sequence Information
- Coding Sequence
- ATGGATGAAAACGAGATAAAACAAGAGTTTGATAAAAATGTACGGTGTCGAACATGTCTTAATGTCGGCAGAAAACTAACACCATTAGCAGaatgtttaaatgtttttaaattattaatatctcAGATAGAATCATCGgatataacattatcaaacacATTGGAAGTATGTTGGGAATGCCATGCATTGTTGAAGAGAGCTGCCAAGTTCCAAAGTCATGTGAAGAAGGCGAATGAATTGTTGGAAATTGGACAGtCTTACCTATGCGGAACTCTATCAACATTAACAACTGTAATTCTCAATGATTTAACGCATACAATATACATAAACGGATCACTACAAACAAATACAAAAGGAAACAAAACAGAACCTTTAAAGACAGACGAATCCAGTGACAACGAACCAACGCACCAATATGAACCCACTGAGATACAAATCAAAACGGAATATGATAGAGAAAAAAAGACCAACCGTTGGGCCAAGCAAAGAGCAATACAGAACAAAAAACCCaagtttaaattactgacaGATTACGACAAAGTTTTCAGGAAAGTTACGTTGAGTAATGAAGAGTTGAATTCATTTATAGATGTTTTAAAAGGTGCTGATCGTTATAAATCTAAgaaatataaatgcgaaaggtGTGTGATGTTGTTTAAAGATGAGGGAATGGCGGCGAAACATCATAAGAAGTATCATATGGAAACAAATCCTTTCACATGCGATATATGCAATTCAACTTTTGTAAAtaagcgccatctatcggcacACGTACACAAACATTACAATGTTTACGAATGTACCCTCTGCGCGTACagatgtaaaagtaaaaaagagAGAGGTCTACATTTTCGAAAAGAGCACAGAAAAGTGTTTCAGTGTTTGAAATGTGAATTGAAATTTTGTACTCGCCGGGAGTTTTTCAAACACTTTAAAGAACGGCACGAGAATTTCATCTGTGATCACTGCGGGATCAGTTTTAAAATGAGATATTGCATAAAAGATCATATAAGAAAACAACACTCGGCATTCGAATGCAAGCAATGCAACAAAACGTTCGCCCGCTACAATGGTCTGTGGTTACACAATAAACTACGCCACGCCCCGCCCGGACAGACGGCGTACTGCGTCGAATGCGACAAAAGATACGTCGACGTGTATAGATACAAATGGCATCTCGCGAACAGTGCTAGACATAAACCTAGGAAAAAGTTAAGAATCCCATGTCCAGgctgtgataaaatattctcaAAGAACATTTACATGAAAGACCATTACAATTTAGTgcatttgaaatattataaatacagatgTGAGGAGTGTGATAAGAACTTCATAAGAAATGCTGATCTAGTAAAGCATAGGCGGCGAGTGCACGAAGGTATTCTGCCGCCTAAGAACAAGATATGTGATATGTGTGGCCGAGGGTTTACGACAAACAAGATCTTAACCAATCACATGCGAACACACACGGGTGAGCGCCCATTTGTGTGCACTATTTGTCCGGCAAAGTTCGCACAGCATACAGCCCTTGCGTCGCATGTACGTGCTGTGCATGATAAGCGTGACCAGTGA
- Protein Sequence
- MDENEIKQEFDKNVRCRTCLNVGRKLTPLAECLNVFKLLISQIESSDITLSNTLEVCWECHALLKRAAKFQSHVKKANELLEIGQSYLCGTLSTLTTVILNDLTHTIYINGSLQTNTKGNKTEPLKTDESSDNEPTHQYEPTEIQIKTEYDREKKTNRWAKQRAIQNKKPKFKLLTDYDKVFRKVTLSNEELNSFIDVLKGADRYKSKKYKCERCVMLFKDEGMAAKHHKKYHMETNPFTCDICNSTFVNKRHLSAHVHKHYNVYECTLCAYRCKSKKERGLHFRKEHRKVFQCLKCELKFCTRREFFKHFKERHENFICDHCGISFKMRYCIKDHIRKQHSAFECKQCNKTFARYNGLWLHNKLRHAPPGQTAYCVECDKRYVDVYRYKWHLANSARHKPRKKLRIPCPGCDKIFSKNIYMKDHYNLVHLKYYKYRCEECDKNFIRNADLVKHRRRVHEGILPPKNKICDMCGRGFTTNKILTNHMRTHTGERPFVCTICPAKFAQHTALASHVRAVHDKRDQ*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -