Lpop031707.1
Basic Information
- Insect
- Laothoe populi
- Gene Symbol
- Zfat
- Assembly
- GCA_905220505.1
- Location
- HG992174.1:6553817-6568784[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.004 0.38 12.3 0.3 1 23 213 235 213 235 0.98 2 11 0.00014 0.013 16.9 4.1 1 23 242 264 242 264 0.98 3 11 0.15 14 7.3 1.8 1 23 268 290 268 290 0.93 4 11 0.00013 0.012 17.0 2.1 1 23 295 318 295 318 0.98 5 11 0.0013 0.12 13.8 0.2 1 23 322 345 322 345 0.94 6 11 0.16 15 7.2 0.0 2 20 358 376 358 378 0.93 7 11 0.4 38 6.0 0.2 2 23 422 444 421 444 0.95 8 11 0.001 0.099 14.1 0.5 2 23 460 481 459 481 0.96 9 11 2.9e-05 0.0028 19.0 0.9 1 23 487 509 487 509 0.98 10 11 3.5e-06 0.00033 21.9 2.9 1 23 516 538 516 538 0.95 11 11 5.4e-05 0.0051 18.2 1.4 1 23 544 567 544 567 0.95
Sequence Information
- Coding Sequence
- ATGTATAACATGAAGAAACACAACTTGTCAGCTTATTATGAAGATATAACTGGAATCAATGTAACTGAACAAAAAGACCTCCCACAGAAATTGTGTTGGGAATGTACACACAGGTTGGTGTCTTGCAACCGGTTCAGAAACAAAGCGTTACGAAGCCACTCGCTCATGACTGAGTTATTACAAGCAGCGGAATTTATTACATCTAAAAGTATAACGACCATAGACCGCGAAATCAACTCACTAACAACAAATCTAACGTCAAAGATATTCGAGACCGATTCAGACATTATTGTACAACACtcgaccatagacatagagttGACGCGCATAGACATACCAGAGATAAAAGACGAGAatgatttgaaaaaagaatcCGAAGACTACTCGTCTAGTGATGAGATGTTATCGAAAAGAATCGATGATTTATCTAACGAGACACAGAATAATATTGATGTTTACTCCTCTAGTGAGGAAATTTTATCGAAAAATGCCAAAACAGTTAAAGTCGATAGACGCCGACGACCTGCTAAAGATGTGTTAAATCAAGATATTTTTACGATCACAGATTTAAGTTATGATGAACAGTTGTATGAAATAAGCAAAAGAATGGATTCAGCAAATTATAAGAACTCTGAATATAAATGCAATGAGTGTTATAAGGGGTTTCTGGATGCTGAAGCATTTAAAGGGCATATGGCTAGACATTCTGATaggAGCGGTTCATATAAATGTGAGAtttgtaaaattcgttttaagAAACAACACGCTCTTAGAAACCACACCACCTCACACATGCAGAAGTTTAATTGTAAACAGTGTCCGTATGTCACTACCAGGCGACACGCGGCAAAATTACACGAAGAATACCATAACGGCACCAGCTATCAGTGTCCACACTGTAAGGAGAATTTCGTCAAGATTTCTACATATATGAGTCATATAAGGATCAAACACCCATCAGACTTTGTATGCGAGTTGTGTGGGTACTCCTTTGTCAGTGCCAAAGGCCTGGGGCTCCATAAAAAGCTGAAACATCGTTTCGAAGAACATACTATACCAAAAGACGGACCCAGTTGCGATCAATGCGCTGTAAATTTTATATCCAAAGAGGCTTTAGAGAATCATTTGACCTTATCATCAAAACATAAtgataatattacGAATCCACGTAAAAGAGTTCATAAAACACACGAAAGCAGAAAAGACAAATTAGACTTGGATAAAAAGAAAAAGCGCGGGAACTGCTCGCCCAAGGGACCGATACCTTGTGAACAGTGTGACCAACAACTACCGGACTCACTGGCGTACTACAGACACTTCAGACGATCACACCCGGACAAGAATCGAACCAACTACCCGTCCATGAAGAGCAAAAGCATGTGCGAAGTTTGCGGTAAAATGTTTCAGAGCGCCGCCCTTCTACACGACCACAGCTCCACCCACACTGACTCGAAGCAGTTCAGATGTGCGGTGTGCGACAAACAGTTCCAGCGTCAGTACAGACTGATAGCGCACAGACGCGTCCACCTGACGCACCGAGTGACGCACGCGTGTCGCCTCTGTGACAAGAGCTTCACCACCGCCAGCAACATGCAGCGGCATATGTTCAGCCACACCGGCCTTAAGCCGTTCAAATGCGAGATGTGCGGCAAAGGGTTCAAGCACGCGAGTGAGAAGAGAGTCCACATCACGTATGTGCATCTGAAGAAACCCTGGCCTAAACGAACTAGAGGCAACAAGACAACGGATAGTACAGAGCGCCACCAGTCCGGTGGCACCAATAGCCTTCCAGAACTTTCTACAAATAGAATCCCGTTATTTATTCTAGAAGCTTTGGTGTCACCTATTACAATATGCCCTGTTAAAGTATTTAAcacaGATGAACCATCAGAAGGTGTTCAGCCAAATGCCAACTGTTTGGATCTGGTACAGCCCCTGTGGCCTGCATGCAGCGATCCCAAGATACAAGCTAACATTGTGGACGACAAAccaatatattacaaaatatag
- Protein Sequence
- MYNMKKHNLSAYYEDITGINVTEQKDLPQKLCWECTHRLVSCNRFRNKALRSHSLMTELLQAAEFITSKSITTIDREINSLTTNLTSKIFETDSDIIVQHSTIDIELTRIDIPEIKDENDLKKESEDYSSSDEMLSKRIDDLSNETQNNIDVYSSSEEILSKNAKTVKVDRRRRPAKDVLNQDIFTITDLSYDEQLYEISKRMDSANYKNSEYKCNECYKGFLDAEAFKGHMARHSDRSGSYKCEICKIRFKKQHALRNHTTSHMQKFNCKQCPYVTTRRHAAKLHEEYHNGTSYQCPHCKENFVKISTYMSHIRIKHPSDFVCELCGYSFVSAKGLGLHKKLKHRFEEHTIPKDGPSCDQCAVNFISKEALENHLTLSSKHNDNITNPRKRVHKTHESRKDKLDLDKKKKRGNCSPKGPIPCEQCDQQLPDSLAYYRHFRRSHPDKNRTNYPSMKSKSMCEVCGKMFQSAALLHDHSSTHTDSKQFRCAVCDKQFQRQYRLIAHRRVHLTHRVTHACRLCDKSFTTASNMQRHMFSHTGLKPFKCEMCGKGFKHASEKRVHITYVHLKKPWPKRTRGNKTTDSTERHQSGGTNSLPELSTNRIPLFILEALVSPITICPVKVFNTDEPSEGVQPNANCLDLVQPLWPACSDPKIQANIVDDKPIYYKI*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -