Lpop009341.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Laothoe populi
Gene Symbol
-
Assembly
GCA_905220505.1
Location
HG992153.1:837286-866317[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 7 4.9e-05 0.0046 18.3 1.5 1 23 401 424 401 424 0.95
2 7 5.4e-05 0.0051 18.2 1.1 1 23 630 652 630 652 0.98
3 7 1.4e-05 0.0013 20.0 0.1 2 23 658 679 657 679 0.97
4 7 4.8e-06 0.00046 21.5 0.4 1 23 685 707 685 707 0.96
5 7 3.5e-07 3.3e-05 25.1 1.4 1 23 713 735 713 735 0.99
6 7 1.3e-05 0.0012 20.1 3.1 1 23 741 763 741 763 0.99
7 7 3.5e-07 3.3e-05 25.1 1.0 1 23 769 791 769 791 0.99

Sequence Information

Coding Sequence
ATGAGGAATGTGGGTGCCCATCTTTTGGAGGACAAGATGGATGAGGCGGTCACGCAGTATATCAATTCACATCAGGCAAACGAGCCAGTGCATGTGAACTCCAACCCTTTGGCTCTCAATGTACAAGATGACGGAGGAGGAAGGATCACCGTTATGCACACACAGAATTTCACATCACAAATGTGCAGgCAAGTCTCAGTGGGTGACCAAGTTCCTGAAGGACAATGGGGCGAGGAACTCCTGGATTCAGACAGCAGGATCGCTGCCATTGTTGCTCAGTTGGCACAACATTCCCGCGCATCGCACCAGATACATCACAAGGTGCCTACTGTCAGAGGGGACGTTGATACATCTGTTATACTCGATGGGTCCATGAGGCTTTTTAATGGGCAGACTTTGGATCAGCAACAAGAACCCATTGTGGTCCATGTACCTTCGCTCCCATCATTGCCTCCTCTGCAGGAAATGAAGAGATGTCAGGAGACGGGCTGGTTTAACAACAAAGCCAAGACTGTGACTACATTGAAGGATGAGACAACTATGTTGGCGGAGACAGATAATTCTGTACTGGAGCTTGGACCGGGGGCATCCCCCGCGCACCATAAACAACAGAGTAAGAAGAGTTTACCGCATAAGAAGAGGATATCTAGGAAACTGAAGAAGAACAATGGTGGCAGCACACCGCAGCAGGGCATAGTGGTGATAAACTGTTCTGAAGATGTGCAGCATGAAGAAATACTCCCGGATAACTTTGTGACTGGTGTGCAGCATCAGGAACAGTTACCTGAAGATACACATCATATCACACATGAGGTCCGTCCCATCCTGTTGTGTCAACTGTGCGGGGAGTTCTACGGCGAGGACCAGCTCAAGTTCTACCACCATCTGAAGCAGCACTACGAGCCGCACGCCATCATCATAGACAACCCCGTACCTGACTTAGCCATAGATAAGATAACAAACACCTGCATAGTGGACAACGTAGCAACTCTCCCGGACTCGATCGTTGAACTGTCTCTAGAGAACACTGTACCAAAAACAGTGTACCAGAGCATAGACAAGCACATACTATACACCTCAAGCGATAAGACACTCAACTACGCTAGCAATAAGGTGCAATACTCCATGGCTAGTATGGATAAGGAGCCCCATATAACTGAGAAGACGGATTTGTATGAAACATTGGATAAGTTAGAGTTGTATAATTGTGGGAAGTGTAATAAGACTTTTAGGAAGCAGAAGCAGTTCGAAGCTCATGTAAAAGAGGCTCATTCTAATTCtaagCTGGATGATATGGGGGAATTCAGCGAACCCGAAGACCTTATGGAGGGTATCCACGTGACGGTGGACGTCGACGCTGACCAAGGGGATCGGGGACACGGGGATCATAACGAGGGGGATCCGAACGAACCGGACTATGACCCCGCGTTACTGCCACACCTCACTGTGGAGAACGGACATGTGCATCAGGACCATGTGAGGCATTGGTATATGCGTGGCGCTTGTCCTGATACTGCGTGCAGTCCAGACGACGGCTACTGTCCCGTCTGtgtaccaccaccaccaccatcaCATCCCACTCATCCCACACATCCAACACATCCCACACATCCAACACATCCCGCACATCCTACACATCCCACTCAAGTAACACACACTTCGCATCCGAGTCACCCTACAAGTACTCATCCCACTGCTACGGCCAACCCACCGAGGGAAAATCAACAGGAACCGTCAACGATGAAATTGATGCTTAAAGAGGAAGTCATCCAACGAATCCTGGACATGGGCGTCAATAGCAAAATCCCAGACAACGTGATGGTCGCCGAGGAGCTACCCCAAGAGCCTGAAGCACAGACCAAAGGCAAGAAGAAGGGTGGCAAGAAGTACTCGTGTGGTCAGTGTGGACGCGTGTTTGAGCACCGCAGCAGTCTGCTGTACCACGTGCTGTCGCATGGTGGCCGGCAGCAGGTGTGTCGGGACTGCGGCAAGGGGTTCTATACTGCCGGAGCACTCAAGATTCACCGGCGCGTGCACAACGGCGACCGCCCGTACAAGTGCGATGTCTGTGGAAGAGACTTCAGGCAGTGGAGCGATCTCACATATCACAAGGTTATACATTCTAACCAGAAATGTTACAAATGCGATTTTTGCGGCAAAGAGTTCGCCCGCAAGTATTCACTGAACGTGCATCGCCGCATACACACGGGCGAGCGGAACTACAAGTGCGAATACTGCAACAAGAGCTTCCGAGCCTCCTCGTATAGACTCAGCCATATGCGGACGCACACGGGCGACCGACCCTACAAATGTGAACAGTGCGATAAATCATTCCGAGTCGCTTTCGACTTACGTCGGCATATACTCACTCATGAAAAGGCGCGCAACAGGTGCGAGCAACAAAAACCAAAGGTCAAGGAGGAGAAACAAGGAGAAAACACGGAGGAAGCCAAAGAACCACCAGCCAAGGTCAAGAAAATCGCAGTAGCCTCGACCACCAGACTACCCACAATATTAAAAGTCGACAAAAAACCAAAGCAAGCGAAGAAAAATGCCAAAAAAGGTGCTCCGAACGTAACAGTGGGTCAGAATAATGGAGAATTTAAAATGAGTTCCGAATTTACAAACAATGTAGTAGTTTTCGATACTAGGCAAGAAGGCTATAACAAATTTAAAGATGTATATAATGAAGAATACAAGGGCGTTAATTATAAGAATGAACCAAGTAGTTATAAGGAAGAAGATAATGATAGGGACTTTGCTATTCTTAAACCTATGTTAAGAAATAACGTTCTAGAAGAACAAGACAAGCCTATATATGCCAGATCCGAAAATACAGACGGCAAAATGCAAATATACACTCATGTAGAGAAGAAAGAGTATACCGGTCCTATAGTACAGAACTCTCAAGCACTAGGCGATGCTAGACATCTAGATCGAGACATTGCCAGGGAAGTGAGAGCTGACATGACGGATGGTATAGAGCACGGGTTTTTCGAAAGACTCACGGCGTTGTACAATATACCAGCTGTTTGA
Protein Sequence
MRNVGAHLLEDKMDEAVTQYINSHQANEPVHVNSNPLALNVQDDGGGRITVMHTQNFTSQMCRQVSVGDQVPEGQWGEELLDSDSRIAAIVAQLAQHSRASHQIHHKVPTVRGDVDTSVILDGSMRLFNGQTLDQQQEPIVVHVPSLPSLPPLQEMKRCQETGWFNNKAKTVTTLKDETTMLAETDNSVLELGPGASPAHHKQQSKKSLPHKKRISRKLKKNNGGSTPQQGIVVINCSEDVQHEEILPDNFVTGVQHQEQLPEDTHHITHEVRPILLCQLCGEFYGEDQLKFYHHLKQHYEPHAIIIDNPVPDLAIDKITNTCIVDNVATLPDSIVELSLENTVPKTVYQSIDKHILYTSSDKTLNYASNKVQYSMASMDKEPHITEKTDLYETLDKLELYNCGKCNKTFRKQKQFEAHVKEAHSNSKLDDMGEFSEPEDLMEGIHVTVDVDADQGDRGHGDHNEGDPNEPDYDPALLPHLTVENGHVHQDHVRHWYMRGACPDTACSPDDGYCPVCVPPPPPSHPTHPTHPTHPTHPTHPAHPTHPTQVTHTSHPSHPTSTHPTATANPPRENQQEPSTMKLMLKEEVIQRILDMGVNSKIPDNVMVAEELPQEPEAQTKGKKKGGKKYSCGQCGRVFEHRSSLLYHVLSHGGRQQVCRDCGKGFYTAGALKIHRRVHNGDRPYKCDVCGRDFRQWSDLTYHKVIHSNQKCYKCDFCGKEFARKYSLNVHRRIHTGERNYKCEYCNKSFRASSYRLSHMRTHTGDRPYKCEQCDKSFRVAFDLRRHILTHEKARNRCEQQKPKVKEEKQGENTEEAKEPPAKVKKIAVASTTRLPTILKVDKKPKQAKKNAKKGAPNVTVGQNNGEFKMSSEFTNNVVVFDTRQEGYNKFKDVYNEEYKGVNYKNEPSSYKEEDNDRDFAILKPMLRNNVLEEQDKPIYARSENTDGKMQIYTHVEKKEYTGPIVQNSQALGDARHLDRDIAREVRADMTDGIEHGFFERLTALYNIPAV*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01010653;
90% Identity
-
80% Identity
-