Lpop031512.1
Basic Information
- Insect
- Laothoe populi
- Gene Symbol
- -
- Assembly
- GCA_905220505.1
- Location
- HG992174.1:3321930-3338426[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 3.1 2.9e+02 3.2 0.9 1 20 291 310 291 312 0.92 2 28 2.2 2.1e+02 3.6 0.2 1 19 389 407 389 410 0.77 3 28 0.61 57 5.4 2.4 1 23 681 703 681 703 0.95 4 28 8.2 7.8e+02 1.8 0.4 3 23 710 730 708 730 0.85 5 28 0.25 23 6.6 3.0 3 23 823 843 821 843 0.95 6 28 0.0055 0.52 11.8 3.4 2 23 859 880 858 880 0.96 7 28 5.3e-07 5e-05 24.5 1.4 1 23 886 908 886 908 0.98 8 28 0.00056 0.053 14.9 0.3 3 23 915 935 913 935 0.96 9 28 0.0075 0.7 11.4 4.2 1 23 941 964 941 964 0.98 10 28 1.7 1.6e+02 4.0 0.2 2 19 972 989 971 990 0.83 11 28 0.00019 0.018 16.5 1.1 3 23 1003 1024 1002 1024 0.97 12 28 1.3 1.3e+02 4.3 2.3 1 23 1209 1231 1209 1231 0.95 13 28 8.2 7.8e+02 1.8 0.4 3 23 1238 1258 1236 1258 0.85 14 28 0.00082 0.077 14.4 3.2 2 23 1384 1405 1383 1405 0.96 15 28 5.3e-07 5e-05 24.5 1.4 1 23 1411 1433 1411 1433 0.98 16 28 0.00056 0.053 14.9 0.3 3 23 1440 1460 1438 1460 0.96 17 28 0.21 20 6.9 3.7 2 23 1467 1489 1466 1489 0.96 18 28 0.57 54 5.5 0.1 2 19 1497 1514 1496 1515 0.82 19 28 0.0031 0.29 12.6 1.0 3 23 1528 1549 1527 1549 0.96 20 28 0.61 57 5.4 2.4 1 23 1735 1757 1735 1757 0.95 21 28 8.2 7.8e+02 1.8 0.4 3 23 1764 1784 1762 1784 0.85 22 28 0.25 23 6.6 3.0 3 23 1877 1897 1875 1897 0.95 23 28 0.00082 0.077 14.4 3.2 2 23 1913 1934 1912 1934 0.96 24 28 5.3e-07 5e-05 24.5 1.4 1 23 1940 1962 1940 1962 0.98 25 28 0.00056 0.053 14.9 0.3 3 23 1969 1989 1967 1989 0.96 26 28 0.19 17 7.0 4.5 2 23 1996 2018 1995 2018 0.96 27 28 0.57 54 5.5 0.1 2 19 2026 2043 2025 2044 0.82 28 28 0.00034 0.032 15.6 1.3 3 23 2057 2078 2056 2078 0.96
Sequence Information
- Coding Sequence
- ATGAGTGAAAATAGTAAACGGAAGTTCGAAACAGATAAACAGGACGGGCATGATATTAAAGATTTGGATGTTAGCAATAATCAGGAATTGCAGAAGCAATTACACACAGATGAATATGGGGTGAAGATAGAAAATGAAAGTGAGGATCAACTTCTTATTGACATAGCGAACATTAAAAAGGAAATAAACGAAAGTGGATATGAAGAGAATCCACAGATTAAGTTCTGTGTAAGAGTAGAAGTTAAGGAACATAATGAAGACATAAAACACAACATTAAAATCGAAATTATCAATCTGGAAGAGTCTAATAAAGCTCAAAGTTTGAACGATGAGAGTAGAAATAACCAAGATAAATTAAGGAATGAGAAGTTAACAGGGGCGACACTGATAGCGCCTTTAAAAATTGCTGATAtagatttaaaacaattatacgATGAAGTAAACGCAATAGCCAGTACGTCAACCAATCTAGCAGATAAAATTTTGGCAATCGAGTTAAAAAATAACTGGGGTATGGTATTAAGACATGTGGTAGACAATGACCCGATAAATGACAAAATTCAAGAcgtcataaataataaatggaaAGAATGGATTAGCATTTCGAAATATCGTGAGACACCCATATTCTATAAATGTTACATTTGCAAGAAAGCTTGGTGGCACTTAGAGCCTTTTAGAGCTCATTTACCAAGACATCACATAGATACATACCAAATTGAACTAGAAGAACAATTACATGAAGCAAACATTATAGCTTATGGTACGATAAATGTACCAAAGATCCAATATTTTAAAGCAGACGGAGAATGTTGGAAATGTGCCAATCCGTTCGAATTCCATGTCTCATCTAAAAAACAATATGCATCATACCTTTGTAGGTACTGCGAggattatttttatacttgTACGGACCTACAGGCGCACCAAGGAGTATGCTGGCAGTATTTGAAACATAGAGAAATAGAAAGACAAGAGGAAATGAAGATCTGTTCTCTATGCTGTTGTCTGTTCCCAACTAAAGAGAAATTGAAAAAGCATTTGGTTACGAGGCATTCAGTCAGATCAGACCATCCAGTTCAGTCTCAATACAAAATATGTTCCACTTGCAATTTGAGATATTTCATTCATGGAGTGCATCACTGCCCTAAGAAGTTGATGAATTTCAACTGCGAGAGATGTAATCGTGGGTTTACAAGTACATTGTTGGTTGATATACACACAAGATTGACTGAAAGTAATGTTAACTGTCAGATATGTGGGCAGAGATTACCTAAAAAATGTATGGAGACTTTACATTATCAAACTCATACGGATCAATTCAAAATGGCTTACAAATGTATTATTTGTACCCAAATGGTGGTgtatttggatgaaatttcaGCTAAACGCCATAAGCATCAGGTGCATAGTACGCCAAGCCATAAAAAGAGGGTTTATTTTGAAAAGgTTTTACTGCCAAAATCTTATTTTCCTGAAGGAGCAGTGATACAGAAAGCGATAGTCCCACTGGGTATTCAGACACAAGAAAtcgagccggaaAAGCTTTATGTAAAATCATTAGTTCAAGGTGATGTCCCCGTCTTCAAAACGCAGGAAGTGAAAAATTCTTATCAGGCCAAAAGCAATGTCAATCCGGAAAATGAACTGAATATAGCATTAACGGAAATCAAGAAGGAAATGGAGGTGGATGCTGAGGTCCACCCCGGATGTTCTGCAACAGTAGAAGAGCAGACTCTATCTCATGATGATGATTTAACTTTCGAGTTTCATGAGGAACCGCTGAGTGAGGAAGCGATATTACAGGAGCAtataaaaatggaaataaaatcaGAACCGATGGATGAAGAAAATGAAGATGATATATGTCTATCGATTGAGTTGCCCGCAGAACCAGAATATGAACTAGTAGAAGCTATAAAACAAGAGCCCGAAGACCATTTAATCATAAACGAAGAAGTTGAACACAATGAGATCCTAATTCCAGAGTCAACGCACCCTCGACTCCGACCAATGGAACACAAACAATCAAAATCCAGATACCCATGCTCCAGATGCAACAAAACTTTTCTCACCGCCAAGAAATATTTACTACATTTCACTACACATGGAATAGAATATATGTGTTGTCCAGTATGTCTGCAGTCCTTCGAGAATGTGACTGAGCTGTTACCACACGTGACTAACCATGTCAAACAGACTTACTTGAAGATGAGAGTGATTGATAAATCAGCTCCGGGAAAGAAACGTAAACATGCCAGGAGCAAAGATATATACCAGTGCAAAGAGTGTAAAAGTAAAGTGGAACATAATCACCTGTACAGTCACTGGGACACGCATTTCAAAACTGGGTGGAAAAGAAATGAATTGGACGACCGTGTTGCAAATGACATGTCGTTGCAATCTGAAGGACTTAAAATGGTTAttaAAAATCTCGTAGCGAGCAAAAAACACATGTTAATGGATTGTGTGATATGCCATAGACATTTTGACAGGAAAGACGATTCCAAAAGGCATTTGATTGAGCATCTATTGACGGACGCTTACTCTAACAAACCTCTATACGGAGCTTTAAGGTGTCAAATTTGCCACATGGGCTTCGAGAAGCCAAACCATTATAAGCTACACATGCGCGACCACGGCTCCCTCCCTGTGTACAGATGTGAGATATGCGACAGAGCGTTCAGTGACTCCAGTAACTTCACCAAGCACAAGAAAGTGCACAACTTGCAAGCCGTCATATGTGATATATGCTCGAAAAAGTTTCAGTCGAAGGTATCGCTGGTGAAGCACTTGGagATGCATCGCACAACAAAACCCTTCACTTGCCAGCTGTGTCATCGTGTGTCCTTCACAGAGTCGGCCTACAAGAGACACATCCGAAAATTCCATGACACAGCTGATATGAAGATCAAGTGTCAGTTGTGTGGCAAGAAGTATGGCAGCTTGAAAGAGAAATGGGACCATCTCTGGCTAGTGCATAAGGAGAGGAAGGATAAAGCCGACTGTCTAATATGCAACAAGGAGTTCAGAAGGTTTATAGACTTGAAAAGGCATATCAAGAAGGACCATTCAGTCCTGCCGGCCCGTAAGGCGGGGAAGACTGATGATATCGAGGAGGTTCTGCGTGATAATCCAAGTTTGGAAATGACTGAAGGTGATGTCCCCGTCTTCAAAACGCAGGACGTGAAAAAATCTTACCAGGCCAAAAGCAATGTCAATCCGGAAAATGAAATGAATATAGCATTAACGGAAATCAAGAAGGAAAAGGAAGCAGACGGTGAGGCCCACCCCGGTTGTTCTGCAACAGTAGAAGATCAGACTCAATCTCATGATGATGATTTAACTTTCGAGTTTCATGAGGAACCGTTGAGTGAGGAAGTGATATTACAGGAGGATATAAAAATGGAAATAGAATCAGAACCAATGGACGAAGAATATGAAGATGTAATATGTCTATCTATAGACTTGCCTAAGCCTGATTATCAACTAGAAGAACCTATAAAACAAGAGCCCGAAGACTATATGACCATAAATGAAGACGTTGAACACAGTGAGACCTTAATTCCAGAGTCATCGCACCCTCAACTCCAACCAATGGAACACAAACAATCAAAATCCAGATACCCATGCTCCAGATGCAACAGAACATTTCTCACCGCCAAGAAATATTTACTACATTTCACTACACATGGAATAGAATATATGTGTTGTCCAGTATGTCTGCAGTCCTTCGAGAATGTGACCGAGCTGTTACCACACGTGACTAACCATGTCAAACAGACTTACTTGAAGATGAGAGTGATTGATAAATCAGCTCCGGGAAAGAAACGTAAACATGCCAGGAGCAAAGATATATACCAATGCAAAGAGTGTAAAAGTAAAGTGGAACATAATCACCTGTACAGTCACTGGGACACCCATTTCAAAACTGGGTGGAAGAGAAATGAATTGGACCGTGTTGCAAATGACATGTTGTTGCAATCTGAAGGACTTAAAATGGTTATTGAAAATCTCGTAGCGGGCAAAAAAAACAAGGATTGTGTGTTATGCCATAGACATTTTGACAAGAAAAACGATTCCAAAAGGCATTTGATTGAGCATCTACTGACGGACGCTTACTCTAACAAACCTCTATATGGAGCTTTAAGATGTCAAATTTGCCACGTGAGCTTCGAGAAGCCAGACCATTATAAGCTACACATGCGCGACCACGGCTCCCTGCCTGTGTACAGATGTGAGATATGCGACAGAGCGTTCAGTGACTCCAGTAACTTCACCAAGCACAAGAAAGTGCACAACTTGCAAGCCGTCATATGTGATATATGCTCGAAGAAGTTTCAGTCGAAGGTATCGCTGGTGAAGCACTTGGagATGCATCGTACAACAAAACCCATCACTTGCCAGCTGTGTCATTGTGTGTCCTACACAGAGGCGGCCTACAAGAGACACATCCGAAAATTCCACGACAGAGCTAATATAAAGATCAAATGTCAGTTGTGCGGCAAGATGTATAGCAGCATGAAAGAGAAGTTGGACCATCTCTGGCTGGTGCATAAGGAGAGGAAGGATAAAGCCGACTGTTTAATGTGCAAAAAAGAGTTCAGAATGCTTATAGACTTGAAAAGGCATATCAAGAAGGACCATTCAGTCCTGCCGGCCCGTAAGGCGGGGAAGACTGATGATATCGAGGAGGTTCTGCGTGATGATGCAAGTTTGGAAATGACTGAAGGTGATGTCCCCGTCTACAAAACGCAGGAAGTGAAAAAATCTTATCAGACCAAAAGCGAAGTAAATCCTGAAAATGAACTGAAAATAGCATTAACGGAAATCAAGAAGGAAATGGAGGTGGACGCTGAGGTCCACTCCGGCTGTTCTGCAACAGTAGAAGAGCAGACTCTATCTCATGAAGATGGAACTTTCGAGTTTCATGAGGAACCGCTGGGTGATGAAACGATACTACCGGAGGATATAAAAACGGAAATAAAATCAGAACCGATGGATAAAGAAAATGATGATAATATAATATGCCTATCCATAGAGTTGCCCGCAGAACCAGAATATGAACTAGTAGAAGCTATAAAACAAGAGCCCGAAGACCATTCAATCATAAACGAAGAAGTTGAACACAATGAGATCTTGATTCCAGAGTCATCGCACCCTCGACTCCAACCAATGGAACACAAACAATCAAAATCCAGTTACCCATGCTCCAGATGCAACAAAACATTTCTCACCGCCAAGAAATATTTACTACATTTCACTACACATGGAATAGAATATATGTGTTGTCCAGTATGTCTTCAGTCCTTCGAGAATGTGACCGAGCTGTTACCACACGTGACTAACCATGTCAAACAGACTTACTTGAAGATGAGAGTGATTGATAAATCAGCTCCGGGAAAGAAACGCAAACATGCCAGGAGCAAAGATATATACCAATGCAAAGAGTGTAAAAGTAAAGTGGAACATTATAACCTGTACAGTCACTGGGACACACATTTCAAAACTGGGTGGAAGAGAAATGAATTGGACGACCGTGTTGCAAATGACATGTCGTTGCAATCTGAAGGACTTAAAATGGTTATTGAAAATCTCGTAGCGAGCAAAAAACACATGTTAATGGATTGTGTGATATGCCATAGACATTTTGACAGGAAAGACGATTCCAAAAGGCATTTGATTGAGCATCTATTGACGGACGCTTACTCTAACAAACCTCTATACGGAGCTTTAAGGTGTCAAATTTGCCACGTGAGCTTCGAGAAGCCAGACCATTATAAGCTACACATGCGCGACCACGGCTCCCTGCCTGTGTACAGATGTGAGATATGCGACAGAGCGTTCAGTGACTCCAGTAACTTCACCAAGCACAAGAAAGTGCACAACTTGCAAGCGGTCATATGTGATATATGCTCGAAGAAGTTTCAGTCGAAGGTATCGCTGGTGAAACACTTGGAGATGCATCGCACAACAAAACCCATCACTTGCCAGCTGTGTCATTGTGTGTCCTACTCGGAGTCGGCCTACAAGAAACACATCCGAAAATTCCACGACAGAGCTGATATAAAGATCAAGTGTCAGTTGTGTGGCAAGATGTATAGCAGCATGAAAGAGAAGTTGGACCATCTCTGGCTGGTTCATAAGGAGAGGAAGGATAAAGCCGACTGTTTAATGTGCAAAAAAGAGTTCAGAAGGCTTATAGACTTGAAAAGGCATATCAAGAAGGACCATTCAGTCCTGCCGGCCCGTAAGGCGAGGAAGACTGGTGATATCGAGGAGGTTCTGCGTGATGATCCAAGTTTGGAAATGACTGAAGGTGAAACGCTTATTGTCTATGAGTGA
- Protein Sequence
- MSENSKRKFETDKQDGHDIKDLDVSNNQELQKQLHTDEYGVKIENESEDQLLIDIANIKKEINESGYEENPQIKFCVRVEVKEHNEDIKHNIKIEIINLEESNKAQSLNDESRNNQDKLRNEKLTGATLIAPLKIADIDLKQLYDEVNAIASTSTNLADKILAIELKNNWGMVLRHVVDNDPINDKIQDVINNKWKEWISISKYRETPIFYKCYICKKAWWHLEPFRAHLPRHHIDTYQIELEEQLHEANIIAYGTINVPKIQYFKADGECWKCANPFEFHVSSKKQYASYLCRYCEDYFYTCTDLQAHQGVCWQYLKHREIERQEEMKICSLCCCLFPTKEKLKKHLVTRHSVRSDHPVQSQYKICSTCNLRYFIHGVHHCPKKLMNFNCERCNRGFTSTLLVDIHTRLTESNVNCQICGQRLPKKCMETLHYQTHTDQFKMAYKCIICTQMVVYLDEISAKRHKHQVHSTPSHKKRVYFEKVLLPKSYFPEGAVIQKAIVPLGIQTQEIEPEKLYVKSLVQGDVPVFKTQEVKNSYQAKSNVNPENELNIALTEIKKEMEVDAEVHPGCSATVEEQTLSHDDDLTFEFHEEPLSEEAILQEHIKMEIKSEPMDEENEDDICLSIELPAEPEYELVEAIKQEPEDHLIINEEVEHNEILIPESTHPRLRPMEHKQSKSRYPCSRCNKTFLTAKKYLLHFTTHGIEYMCCPVCLQSFENVTELLPHVTNHVKQTYLKMRVIDKSAPGKKRKHARSKDIYQCKECKSKVEHNHLYSHWDTHFKTGWKRNELDDRVANDMSLQSEGLKMVIKNLVASKKHMLMDCVICHRHFDRKDDSKRHLIEHLLTDAYSNKPLYGALRCQICHMGFEKPNHYKLHMRDHGSLPVYRCEICDRAFSDSSNFTKHKKVHNLQAVICDICSKKFQSKVSLVKHLEMHRTTKPFTCQLCHRVSFTESAYKRHIRKFHDTADMKIKCQLCGKKYGSLKEKWDHLWLVHKERKDKADCLICNKEFRRFIDLKRHIKKDHSVLPARKAGKTDDIEEVLRDNPSLEMTEGDVPVFKTQDVKKSYQAKSNVNPENEMNIALTEIKKEKEADGEAHPGCSATVEDQTQSHDDDLTFEFHEEPLSEEVILQEDIKMEIESEPMDEEYEDVICLSIDLPKPDYQLEEPIKQEPEDYMTINEDVEHSETLIPESSHPQLQPMEHKQSKSRYPCSRCNRTFLTAKKYLLHFTTHGIEYMCCPVCLQSFENVTELLPHVTNHVKQTYLKMRVIDKSAPGKKRKHARSKDIYQCKECKSKVEHNHLYSHWDTHFKTGWKRNELDRVANDMLLQSEGLKMVIENLVAGKKNKDCVLCHRHFDKKNDSKRHLIEHLLTDAYSNKPLYGALRCQICHVSFEKPDHYKLHMRDHGSLPVYRCEICDRAFSDSSNFTKHKKVHNLQAVICDICSKKFQSKVSLVKHLEMHRTTKPITCQLCHCVSYTEAAYKRHIRKFHDRANIKIKCQLCGKMYSSMKEKLDHLWLVHKERKDKADCLMCKKEFRMLIDLKRHIKKDHSVLPARKAGKTDDIEEVLRDDASLEMTEGDVPVYKTQEVKKSYQTKSEVNPENELKIALTEIKKEMEVDAEVHSGCSATVEEQTLSHEDGTFEFHEEPLGDETILPEDIKTEIKSEPMDKENDDNIICLSIELPAEPEYELVEAIKQEPEDHSIINEEVEHNEILIPESSHPRLQPMEHKQSKSSYPCSRCNKTFLTAKKYLLHFTTHGIEYMCCPVCLQSFENVTELLPHVTNHVKQTYLKMRVIDKSAPGKKRKHARSKDIYQCKECKSKVEHYNLYSHWDTHFKTGWKRNELDDRVANDMSLQSEGLKMVIENLVASKKHMLMDCVICHRHFDRKDDSKRHLIEHLLTDAYSNKPLYGALRCQICHVSFEKPDHYKLHMRDHGSLPVYRCEICDRAFSDSSNFTKHKKVHNLQAVICDICSKKFQSKVSLVKHLEMHRTTKPITCQLCHCVSYSESAYKKHIRKFHDRADIKIKCQLCGKMYSSMKEKLDHLWLVHKERKDKADCLMCKKEFRRLIDLKRHIKKDHSVLPARKARKTGDIEEVLRDDPSLEMTEGETLIVYE*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -