Basic Information

Insect: Laothoe populi
Gene Symbol: su(Hw)
Assembly: GCA_905220505.1
Location: HG992166.1:11268152-11282742[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00012 0.011 17.1 2.7 1 23 80 103 80 103 0.96

2 12 0.035 3.3 9.3 3.6 3 23 112 133 111 133 0.97

3 12 5.2e-06 0.00049 21.4 0.1 1 20 138 157 138 159 0.96

4 12 2.5e-07 2.4e-05 25.5 0.4 1 23 170 193 170 193 0.97

5 12 0.04 3.8 9.1 3.6 1 23 201 224 201 224 0.96

6 12 0.00014 0.013 16.9 0.3 1 23 231 253 231 253 0.98

7 12 0.1 9.7 7.8 0.1 1 23 258 280 258 280 0.96

8 12 9.1e-06 0.00086 20.6 2.8 1 23 286 308 286 308 0.99

9 12 0.0023 0.22 13.0 0.1 2 23 312 333 312 333 0.97

10 12 0.4 37 6.0 0.1 8 23 351 366 339 366 0.79

11 12 0.00014 0.013 16.9 0.7 1 23 372 394 372 394 0.98

12 12 0.97 91 4.8 0.5 3 23 402 424 401 425 0.81

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00012	0.011	17.1	2.7	1	23	80	103	80	103	0.96
2	12	0.035	3.3	9.3	3.6	3	23	112	133	111	133	0.97
3	12	5.2e-06	0.00049	21.4	0.1	1	20	138	157	138	159	0.96
4	12	2.5e-07	2.4e-05	25.5	0.4	1	23	170	193	170	193	0.97
5	12	0.04	3.8	9.1	3.6	1	23	201	224	201	224	0.96
6	12	0.00014	0.013	16.9	0.3	1	23	231	253	231	253	0.98
7	12	0.1	9.7	7.8	0.1	1	23	258	280	258	280	0.96
8	12	9.1e-06	0.00086	20.6	2.8	1	23	286	308	286	308	0.99
9	12	0.0023	0.22	13.0	0.1	2	23	312	333	312	333	0.97
10	12	0.4	37	6.0	0.1	8	23	351	366	339	366	0.79
11	12	0.00014	0.013	16.9	0.7	1	23	372	394	372	394	0.98
12	12	0.97	91	4.8	0.5	3	23	402	424	401	425	0.81

Sequence Information

Coding Sequence: atgccACCTAAGCgtaaaaaaatgattaaatcagtaattcataaaaatagttaCACGAAGAAAAATGCTAATTGTAAAGGCAATGCAGAACTAAAAGAAAAAGATAACTCGAAGTCGTCAGATAATGTTAAAATGTGTGGAAATAAAATGTTCGATGAAACTAAGTTGAATGATGTTAAAATTTGTTCTGAAGATAGTGAAGAAAGTCTGTTATGCTCTGACGGTAAAAAGcTAGGATTCTACTGTGAGAAATGTCCTAAAAAGTTTAAGTTTAAAGAGAGTTATACAGCTCATCTTACAAAGGAACATTCTGAGTTGCCTAATAGTGTTGCTTGTCACCAGTGCACTGTAAAATGCCCAGATAAACAAACTTTAAAGGATCATATTAAGAAAGTACATGATAGAGACATATATGAATGTCCTGGCTGCGATAGAACATTCGTCCGACGTTCACATGTAGTACGACATATAGCCCAAAGTGGTTGTGATGGCAAAAGCATAGTTACATATCCATGTGAAATTTGTGATTCCACATTCACAAGAAAAGATAATCTTAGGGTTCATCTAAGAATACAACACTTACATAAAGGCAATAATTCATTCTCTTGCAAATATTGTAACTTTATATCAAAGAACTTCTCCAAGCTAATAGCACATTGGCACAAGAATCATGCAGAGACTCCAAATGTATATGAATGTAACCACTGTGGAAAACCAACTGGCTCCCGTGCAGCTATGACGAAACATTTGGAAATACATGGCGAAAGGAAATTCGCTTGTGTTGtgTGTGGCTACAGTACATTTACGGTGGAAGTGATGCGGCGGCATGTTCTGACGCACGTGGACGACAAGCCGTACAAGTGCACCGTGTGCGGCCGCTCCTACATACAGCGGCTGCAGCTGCACAGGCACATGGAGAAGCACACCGGCAACGTCTGCGGAGTCTGCGGGGACGAATTCAACACGAAGGCTCGATTGATTACACATCAGAGAGTACACAAGGGACTTAAAAAACTTCAGTGTCCAATTCAAAGTTGCCCATACTCTAAAAAAGAAATTTCTAATGAAGCTAATTTAGAAGCGCATTTAAGGTCACATATGGATCATAAACCGTACTCGTGCGAGGTGTGTGGCAAGGAATTCCACCTGGAGGTGAACATGCGGCGACACCTGGCGACGCACACGCTGGACCGCCCGCGCCGCTGCATGTACTGCGTGGCGGCGCGAGCGTACGTGCGCGGCGAGCAGCTCGTGCGACATGTGCGCCGCCACCACGCCAACATCTTCCGCGCACACTTGCAGCACGTGCGCCAGGTGCTCGGCAGCAGCGTCGACGTCGAGCGAGTCAAGAAGTCAGAGCTGGACTCGATCCTGAACGTGCTGGACGCCGAGTCCGAGCGCATCATGCAGGGCTACGGCGGCTCCGGCGTCTTGTACGGCGGCATGCAGGAGAATGAAGATGAAACTTACAAATCTGAAAAGGAAGAAGGCGGACCTTTAATGACAGAGCAAGAGCTTGTTGAAAATTTGAAGAACCTGTTGTCAAAATTGATTGACGAAGAAACGTTACGGTGCTTTGGTTGGCCTGAAACATCTGTTGACGAGGTTTTAGAGAAGGTGATTGAACAATGTGGTTGTCGGCCTGCGGACCGAGAGATGTGGACACGGATGCAGCGCCTTCGAGAAAACGCTAAATATTTGTTCTTGTACGTCATAGAGGACAAGACAATTACTGAAATGTTAGGGAAATACACCATCGATCAAATTATCAAACATATACTTACACAAGTGTCTGAAGACGAAGCGACGAGTTGA
Protein Sequence: MPPKRKKMIKSVIHKNSYTKKNANCKGNAELKEKDNSKSSDNVKMCGNKMFDETKLNDVKICSEDSEESLLCSDGKKLGFYCEKCPKKFKFKESYTAHLTKEHSELPNSVACHQCTVKCPDKQTLKDHIKKVHDRDIYECPGCDRTFVRRSHVVRHIAQSGCDGKSIVTYPCEICDSTFTRKDNLRVHLRIQHLHKGNNSFSCKYCNFISKNFSKLIAHWHKNHAETPNVYECNHCGKPTGSRAAMTKHLEIHGERKFACVVCGYSTFTVEVMRRHVLTHVDDKPYKCTVCGRSYIQRLQLHRHMEKHTGNVCGVCGDEFNTKARLITHQRVHKGLKKLQCPIQSCPYSKKEISNEANLEAHLRSHMDHKPYSCEVCGKEFHLEVNMRRHLATHTLDRPRRCMYCVAARAYVRGEQLVRHVRRHHANIFRAHLQHVRQVLGSSVDVERVKKSELDSILNVLDAESERIMQGYGGSGVLYGGMQENEDETYKSEKEEGGPLMTEQELVENLKNLLSKLIDEETLRCFGWPETSVDEVLEKVIEQCGCRPADREMWTRMQRLRENAKYLFLYVIEDKTITEMLGKYTIDQIIKHILTQVSEDEATS*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00341561;
90% Identity: -
80% Identity: -