Lpop000749.1
Basic Information
- Insect
- Laothoe populi
- Gene Symbol
- -
- Assembly
- GCA_905220505.1
- Location
- HG992146.1:5620728-5625188[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 4.5 4.3e+02 2.7 6.0 1 23 141 163 141 163 0.97 2 19 9.8e-06 0.00092 20.5 1.1 1 23 167 189 167 189 0.98 3 19 0.006 0.57 11.7 0.5 1 21 223 243 223 246 0.87 4 19 0.0072 0.68 11.5 0.3 3 23 255 276 253 276 0.91 5 19 1.7 1.6e+02 4.0 0.4 1 23 334 356 334 356 0.91 6 19 2.4 2.3e+02 3.5 0.3 2 23 382 404 381 404 0.91 7 19 0.016 1.5 10.4 0.3 1 23 426 448 426 448 0.98 8 19 0.00049 0.046 15.1 3.6 1 23 452 474 452 474 0.97 9 19 0.56 53 5.5 0.0 1 23 479 502 479 502 0.89 10 19 0.08 7.6 8.2 1.5 1 23 508 531 508 531 0.95 11 19 8 7.6e+02 1.9 1.5 1 23 600 622 600 622 0.92 12 19 4.1e-05 0.0039 18.5 0.1 1 23 690 712 690 712 0.98 13 19 1.3e-05 0.0013 20.1 0.2 1 23 716 738 716 738 0.96 14 19 0.03 2.8 9.5 1.1 2 23 745 767 744 767 0.92 15 19 0.002 0.19 13.2 4.8 1 23 773 796 773 796 0.97 16 19 0.0057 0.54 11.8 0.2 1 23 802 825 802 825 0.96 17 19 0.00028 0.026 15.9 1.9 1 23 831 853 831 853 0.98 18 19 7.7e-06 0.00073 20.8 3.9 1 23 859 881 859 881 0.98 19 19 0.00021 0.02 16.3 0.2 1 23 885 908 885 908 0.97
Sequence Information
- Coding Sequence
- ATGCGCAGGCGACGTCGCGCTAATAACGAGCTGCCCGAAGAATCTGAGAAACGCATCGCTAAAACAATGATGCGACGGAACGCTATGATTATTCTAGAATGTTCGACGGCCTGGGCATTTAGGTGGTTCCACGGCGCGTTTTACTGCTCTTACTGTGGATCCAAACACGTGGATATACATCCATTAAGAGAACTTGTCCGGCTGAATCATTTAAACCAGCCACCCacgaaaaatattttctctaAATTAACGGAAAACAATATGGTTAAAGTCGATGTAGCTGACCTCACTTGTAAGCTTTGCAATAGCGTTCTGAGCGGAATAGGGCCATTGAAGGAACATTTGTTATTAACACATGACAGGTCTATGTATACCGACTACAGCGACGGAGTACTTCCTTTTAAACTTGACGATGATGGTTTTTATTGCCAAATGTGTTTTActcactttcacaattttgctCGAGTCAATGAGCATATGAACAGTCATTATCAGAACTACATTTGCGACACATGTGGCAAGGCTTTCGTATCTAAATCTCGGTTTAGGAAACATGTGCAATCTCATGAGAAAGGGAGCTTCCCTTGTGGCTCGTGCGACGAAGTTTTGGAGACTCGAGCTGCCAGAATGTTTCATAGGATGCGCGTGCATCGCAAAGGCATTCGGTACACGTGCCCTCGATGCCCTGAAGTGTTTACATCATACCACTTGAGAGTACGTCATCTTGTTGATGTTCACGACCAGCAGAAGATTGAATACGGTTGTGACGTTTGTGGCAAAACTTTTGAAACGAGCTCTAAACGCGCTGGACATTTTCGCCTCGCTCATACTACAGAAAAAAGACATGATTgGTTAAATGAAGACTTGAAGAAATCTGAAGATGGCGCGGTTAGAGTTGTGTGGAAGCGTAAAAGGAGCGTATTGATTGAGGATAAGGCGAACGCCGCGATGATTCTAAAATATTCTAATGCTGTTGTATTCAGATGGCAAAGAGGGAAGTTTATGTGCGCATATTGTCCTCAAAAATGCATTAACGTTGCTGCAATTCGCTCACATTCGACGATTCACAGTAATAAACTGGACATTTTTGAGAAACCAGAAGTCCGAAATACATTTCCATTGAGAGTTGACGTAACTAATTTATCTTGCGAAATTTGTAAACAAGAAGTACATAGTATAGACGGCTTCAAAACTCATTTAGCTCAAGCACATTCGCATAAAGTGAATCAAAAGTATACCGACGGGGTGATACCGTTTGTTTTGACGGAAAAAGATTTCAAATGTGTCCTCTGCGGTGCACAATTCGAGGGCTTCATGAAACTTTTTATTCACATGAACAGCCATTATCAGAGTTTTATATGTCATATATGTGGAAAAGGTTACTCAGCGAAACATAAACTGCGTTCACATAGAGAAAGTCACGAGTTGGGAGAGTTTCAATGCACCAGATGTGATATGGTGTTACCGAGTCGCCCTGCCAAGAACAGACATGTGGCGGCGGTGCATGCGCGCAAGGAGAAGTACAGGTGCCCTTTATGCGATATGTATTTTGATTCTTACCATTCTAGAGTGAGTCATTTGGATAAAATTCATGGGCAGAAGACTGAGTACCGATGCAGCTTGTGTCCAGCGATTTATAAAGCTGAAAGATGTCTACAACCTGATACTAAACAATACTgcCCAACACATCCGACAATCATGTGGCGACCCAAGATTAAACACAAGGACCACAGGCAAAACGCGGCTATAATCATACAGAGTTCTAACGCATGTCCATTTAGGTGGACCCCAGGGAAGTACAAATGCGCATGTTGCGATCTCACGTTCGGCGATTTGCACGGGGTCAGGCTTCACTGGTCAGATCATCCGAATAGAATAGAGTTTCTAAAATTTGCCCGAGCTTATTGTGGAACAAAGGTGGAGGTAACAGATCTGAAATGTGAACTATGTATGCAGAATATGGCTAATTTAGAAACGTTGGCGGAACATTTAATAAAGTTTCACGATAAGCCTATCAAAAATGATTGGGGGTTAGGTGTCACACCGTTCATTATAAAGAATGATGCTTACATTTGTGCGTATTGTGGCGCAAGCTTCGTAGTGTTTAGCGCTCTAAATACTCATATAAACACGCACAATCCTAACTACATCTGCTCTACCTGTGGCAAAGCATTTGCTAcattacaaaatttaaaatcgcaCGTAGTTATGCACGATGTTAATTGGGACCTCAGATGTCGGAAATGTGATGAAGTTTTCGCGACAAAAGATTTGAAACGCCTCCATAATATGTCTAAACACGCGGTGTCGCACCCATATAAATGTCCATATTGTaacgaaaaatttaaaaattataaccaTAGAAGATTGCATTTGGAGAAAAATCATAATAGAAAAGTGGAATACCCTTGTTCAATGTGCCCGGCTGTGTTTTCAATGAGCGACAGAAGGAGAAAACATATCCGTGACGTGCATATTAAACAAAAGACCTTTGTCTGCACTTATTGCTCGCAAGAATTTGTAACACCAGCTTGTATGAGGAGACATTTACAATCACATACCGGAAATATAAACTACAATTGTGAAGTTTGTCGCAAAAGctataaaacatatgaaaatcTTAAACACCATATGAAGGTTCACAGTGACAAGTTTGTGTGCGAAGTTTGTGAGGAGGAGTTCTCTCAAAAGATAACACTTGTTACCCATTTGAAAAGCCAACATCCCAATGTGAAAACAATTAATACAAGCTTATAA
- Protein Sequence
- MRRRRRANNELPEESEKRIAKTMMRRNAMIILECSTAWAFRWFHGAFYCSYCGSKHVDIHPLRELVRLNHLNQPPTKNIFSKLTENNMVKVDVADLTCKLCNSVLSGIGPLKEHLLLTHDRSMYTDYSDGVLPFKLDDDGFYCQMCFTHFHNFARVNEHMNSHYQNYICDTCGKAFVSKSRFRKHVQSHEKGSFPCGSCDEVLETRAARMFHRMRVHRKGIRYTCPRCPEVFTSYHLRVRHLVDVHDQQKIEYGCDVCGKTFETSSKRAGHFRLAHTTEKRHDWLNEDLKKSEDGAVRVVWKRKRSVLIEDKANAAMILKYSNAVVFRWQRGKFMCAYCPQKCINVAAIRSHSTIHSNKLDIFEKPEVRNTFPLRVDVTNLSCEICKQEVHSIDGFKTHLAQAHSHKVNQKYTDGVIPFVLTEKDFKCVLCGAQFEGFMKLFIHMNSHYQSFICHICGKGYSAKHKLRSHRESHELGEFQCTRCDMVLPSRPAKNRHVAAVHARKEKYRCPLCDMYFDSYHSRVSHLDKIHGQKTEYRCSLCPAIYKAERCLQPDTKQYCPTHPTIMWRPKIKHKDHRQNAAIIIQSSNACPFRWTPGKYKCACCDLTFGDLHGVRLHWSDHPNRIEFLKFARAYCGTKVEVTDLKCELCMQNMANLETLAEHLIKFHDKPIKNDWGLGVTPFIIKNDAYICAYCGASFVVFSALNTHINTHNPNYICSTCGKAFATLQNLKSHVVMHDVNWDLRCRKCDEVFATKDLKRLHNMSKHAVSHPYKCPYCNEKFKNYNHRRLHLEKNHNRKVEYPCSMCPAVFSMSDRRRKHIRDVHIKQKTFVCTYCSQEFVTPACMRRHLQSHTGNINYNCEVCRKSYKTYENLKHHMKVHSDKFVCEVCEEEFSQKITLVTHLKSQHPNVKTINTSL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -