Basic Information

Insect: Laothoe populi
Gene Symbol: -
Assembly: GCA_905220505.1
Location: HG992169.1:3242946-3251188[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 7.7e-05 0.0073 17.7 3.6 1 20 234 253 234 256 0.94

2 9 5e-05 0.0047 18.3 1.5 1 23 262 284 262 284 0.99

3 9 1.8e-06 0.00017 22.8 2.1 1 23 290 312 290 312 0.98

4 9 3.3e-06 0.00031 22.0 0.8 1 23 318 340 318 340 0.98

5 9 7.7e-06 0.00073 20.8 0.1 1 23 346 368 346 368 0.96

6 9 4.5e-07 4.2e-05 24.7 0.8 1 23 374 396 374 396 0.98

7 9 0.00027 0.026 15.9 3.6 1 23 402 424 402 424 0.98

8 9 0.0023 0.21 13.0 3.3 5 23 433 451 430 451 0.93

9 9 2.3e-05 0.0022 19.3 5.5 1 23 457 480 457 480 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	7.7e-05	0.0073	17.7	3.6	1	20	234	253	234	256	0.94
2	9	5e-05	0.0047	18.3	1.5	1	23	262	284	262	284	0.99
3	9	1.8e-06	0.00017	22.8	2.1	1	23	290	312	290	312	0.98
4	9	3.3e-06	0.00031	22.0	0.8	1	23	318	340	318	340	0.98
5	9	7.7e-06	0.00073	20.8	0.1	1	23	346	368	346	368	0.96
6	9	4.5e-07	4.2e-05	24.7	0.8	1	23	374	396	374	396	0.98
7	9	0.00027	0.026	15.9	3.6	1	23	402	424	402	424	0.98
8	9	0.0023	0.21	13.0	3.3	5	23	433	451	430	451	0.93
9	9	2.3e-05	0.0022	19.3	5.5	1	23	457	480	457	480	0.97

Sequence Information

Coding Sequence: ATGTCTAATCATCTACAATCTCTTAATGTGCCATTGGACCTTAACAAAACGTGTCGAATATGTTTGCAGTCGAATAAACCAACTTTCGATATATACACGAGTTACTATGTGAAAAGAAACACTCTCTATTGTGAAATGCTGTCTAGCTGTACTAAATTAAAGTTAAACAAAGATGATGGCCTACCAAGACAGATATGCAAAGATTGTTGTAAGCAATTAAAAAGAACATATACATTCAACCTACAATGTGAAAAGAGTGACAGAGAACTTAAAGGGTACTTCCTTAAAGAAGAATTTCAATCAAATAAAAGTCATGAAGATTTAAATAGTGATAGTATTAAAGGAGACACTAAAGCTATGAATTTGGTTGTGTCTATGGTAGATGAGAATggatataaaaatgatattaagATAGAACCTACATATAATGATGGTAATGACAGTTGCTGGGATGCAGATGATGACAACCTCCTGTTAGAAGATATTAAAGCAAAGAAGAGCGTAGATGAATCAAGTTTGAACAGTGgtgatattaaaaatgaaatggtCACTGATGGCATAATCTTaaacaatattgaaattaaGAACAAAATCAAAGcaTCTGGATTAGACGGAtcaaaaccaaaatcaaaacGAGGCAGAAAGAAAAAAGCACTATTAAATGGAGAAACTCCTGCGATACCAGAGAGCAAATTGCCCCACCAATGCGACATCTGTGGCAAGTTCCTCAGCACCAAGAGTAACCTGAAGGCGCACAAGATATGCCACACTGACATAAGACCATATAAGTGTCCTGATTGTCCGTCTTCATTCAGAGGTCACAGTGCACTATTCCAACACAAGAAGGTGCACACGGGTGAAACTCCTTACCACTGCGAATACTGTCCCAAACAGTTTAGCAGACGCACGGGCCTCGTCAACCATATACGGATGCATATTGgaGAGAAACTGTACAGCTGCGACATTTGCTTCAAGAACTTCGTACAGAGCGCGCAGCTGTCCATACACATGAAGCGGCATAAGGGAGACAAACCGTACTTGTGTCAAGACTGCGGCAAAGGTTTTCCAATAAAGGCGGACCTGCGAGTACACCAAAGGATACACAATGGTGAGAAGCCCTACAGCTGCCATCTCTGCACTAAGACCTTCGCCACCGCAGGGAATCTCTCTATACACATTCGGATACACAACAAGGAAGTCAGataCAACTGTGAGGTATGCCATCGGGGGTTCGTGACGTGCAGTGCCTATAACGTGCATCTAAAGCGACACAAAGGGCAGAGAGATCATCATTGCGAGTGTGGCAAGACTTTCTACACATCGTCCGCCTTAAAACAACACAAAGTCGTCCACACGGGTGAAAAGAAATACCAATGCAAAATATGCGAACGGAAATTCACGCAAACTAGTCATTTAAGTCGACATTTCAAAAGAGATCATGCGAAACCCAATATGCCGGTGCCTTCGTCCGATCATTATAAAATTGTGTTGCAAGGAAATAAAGTGTTCGGCCTACTAGATGGCGCTTTTCAGAAGTTTACGGAGAACGCCAATTCTAATGTCAAGTGTGAAGGGTCATAG
Protein Sequence: MSNHLQSLNVPLDLNKTCRICLQSNKPTFDIYTSYYVKRNTLYCEMLSSCTKLKLNKDDGLPRQICKDCCKQLKRTYTFNLQCEKSDRELKGYFLKEEFQSNKSHEDLNSDSIKGDTKAMNLVVSMVDENGYKNDIKIEPTYNDGNDSCWDADDDNLLLEDIKAKKSVDESSLNSGDIKNEMVTDGIILNNIEIKNKIKASGLDGSKPKSKRGRKKKALLNGETPAIPESKLPHQCDICGKFLSTKSNLKAHKICHTDIRPYKCPDCPSSFRGHSALFQHKKVHTGETPYHCEYCPKQFSRRTGLVNHIRMHIGEKLYSCDICFKNFVQSAQLSIHMKRHKGDKPYLCQDCGKGFPIKADLRVHQRIHNGEKPYSCHLCTKTFATAGNLSIHIRIHNKEVRYNCEVCHRGFVTCSAYNVHLKRHKGQRDHHCECGKTFYTSSALKQHKVVHTGEKKYQCKICERKFTQTSHLSRHFKRDHAKPNMPVPSSDHYKIVLQGNKVFGLLDGAFQKFTENANSNVKCEGS*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01010622;
90% Identity: -
80% Identity: -